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TTC29 (tetratricopeptide repeat domain 29)

Identity

Alias_symbol (synonym)NYD-SP14
Other aliasTBPP2A
HGNC (Hugo) TTC29
LocusID (NCBI) 83894
Atlas_Id 54734
Location 4q31.22  [Link to chromosome band 4q31]
Location_base_pair Starts at 146706638 and ends at 146945886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HLA-H (6p22.1) / TTC29 (4q31.22)RNF150 (4q31.21) / TTC29 (4q31.22)SLC10A7 (4q31.22) / TTC29 (4q31.22)
SLC10A7 4q31.22 / TTC29 4q31.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC29   29936
Cards
Entrez_Gene (NCBI)TTC29  83894  tetratricopeptide repeat domain 29
AliasesNYD-SP14; TBPP2A
GeneCards (Weizmann)TTC29
Ensembl hg19 (Hinxton)ENSG00000137473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137473 [Gene_View]  chr4:146706638-146945886 [Contig_View]  TTC29 [Vega]
ICGC DataPortalENSG00000137473
TCGA cBioPortalTTC29
AceView (NCBI)TTC29
Genatlas (Paris)TTC29
WikiGenes83894
SOURCE (Princeton)TTC29
Genetics Home Reference (NIH)TTC29
Genomic and cartography
GoldenPath hg38 (UCSC)TTC29  -     chr4:146706638-146945886 -  4q31.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC29  -     4q31.22   [Description]    (hg19-Feb_2009)
EnsemblTTC29 - 4q31.22 [CytoView hg19]  TTC29 - 4q31.22 [CytoView hg38]
Mapping of homologs : NCBITTC29 [Mapview hg19]  TTC29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF345910 AK093145 AK225725 AK301807 AK314066
RefSeq transcript (Entrez)NM_001300761 NM_001317806 NM_031956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC29
Cluster EST : UnigeneHs.378893 [ NCBI ]
CGAP (NCI)Hs.378893
Alternative Splicing GalleryENSG00000137473
Gene ExpressionTTC29 [ NCBI-GEO ]   TTC29 [ EBI - ARRAY_EXPRESS ]   TTC29 [ SEEK ]   TTC29 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83894
GTEX Portal (Tissue expression)TTC29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA56
Splice isoforms : SwissVarQ8NA56
PhosPhoSitePlusQ8NA56
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC29
DMDM Disease mutations83894
Blocks (Seattle)TTC29
SuperfamilyQ8NA56
Human Protein AtlasENSG00000137473
Peptide AtlasQ8NA56
HPRD14866
IPIIPI00300426   IPI00382873   IPI00966342   IPI00966551   IPI00968279   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA56
IntAct (EBI)Q8NA56
FunCoupENSG00000137473
BioGRIDTTC29
STRING (EMBL)TTC29
ZODIACTTC29
Ontologies - Pathways
QuickGOQ8NA56
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC29
Atlas of Cancer Signalling NetworkTTC29
Wikipedia pathwaysTTC29
Orthology - Evolution
OrthoDB83894
GeneTree (enSembl)ENSG00000137473
Phylogenetic Trees/Animal Genes : TreeFamTTC29
HOVERGENQ8NA56
HOGENOMQ8NA56
Homologs : HomoloGeneTTC29
Homology/Alignments : Family Browser (UCSC)TTC29
Gene fusions - Rearrangements
Fusion : MitelmanRNF150/TTC29 [4q31.21/4q31.22]  [t(4;4)(q31;q31)]  
Fusion : MitelmanSLC10A7/TTC29 [4q31.22/4q31.22]  [t(4;4)(q31;q31)]  
Fusion: TCGASLC10A7 4q31.22 TTC29 4q31.22 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC29
dbVarTTC29
ClinVarTTC29
1000_GenomesTTC29 
Exome Variant ServerTTC29
ExAC (Exome Aggregation Consortium)TTC29 (select the gene name)
Genetic variants : HAPMAP83894
Genomic Variants (DGV)TTC29 [DGVbeta]
DECIPHERTTC29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC29 
Mutations
ICGC Data PortalTTC29 
TCGA Data PortalTTC29 
Broad Tumor PortalTTC29
OASIS PortalTTC29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC29
DgiDB (Drug Gene Interaction Database)TTC29
DoCM (Curated mutations)TTC29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC29 (select a term)
intoGenTTC29
Cancer3DTTC29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC29
Genetic Testing Registry TTC29
NextProtQ8NA56 [Medical]
TSGene83894
GENETestsTTC29
Target ValidationTTC29
Huge Navigator TTC29 [HugePedia]
snp3D : Map Gene to Disease83894
BioCentury BCIQTTC29
ClinGenTTC29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83894
Chemical/Pharm GKB GenePA145147799
Clinical trialTTC29
Miscellaneous
canSAR (ICR)TTC29 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC29
EVEXTTC29
GoPubMedTTC29
iHOPTTC29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:41 CEST 2017

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