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TTC29 (tetratricopeptide repeat domain 29)

Identity

Alias (NCBI)NYD-SP14
SPGF42
TBPP2A
HGNC (Hugo) TTC29
HGNC Alias symbNYD-SP14
LocusID (NCBI) 83894
Atlas_Id 54734
Location 4q31.22  [Link to chromosome band 4q31]
Location_base_pair Starts at 146706638 and ends at 146945886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-H (6p22.1) / TTC29 (4q31.22)RNF150 (4q31.21) / TTC29 (4q31.22)SLC10A7 (4q31.22) / TTC29 (4q31.22)
SLC10A7 4q31.22 / TTC29 4q31.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC29   29936
Cards
Entrez_Gene (NCBI)TTC29    tetratricopeptide repeat domain 29
AliasesNYD-SP14; SPGF42; TBPP2A
GeneCards (Weizmann)TTC29
Ensembl hg19 (Hinxton)ENSG00000137473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137473 [Gene_View]  ENSG00000137473 [Sequence]  chr4:146706638-146945886 [Contig_View]  TTC29 [Vega]
ICGC DataPortalENSG00000137473
TCGA cBioPortalTTC29
AceView (NCBI)TTC29
Genatlas (Paris)TTC29
SOURCE (Princeton)TTC29
Genetics Home Reference (NIH)TTC29
Genomic and cartography
GoldenPath hg38 (UCSC)TTC29  -     chr4:146706638-146945886 -  4q31.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC29  -     4q31.22   [Description]    (hg19-Feb_2009)
GoldenPathTTC29 - 4q31.22 [CytoView hg19]  TTC29 - 4q31.22 [CytoView hg38]
ImmunoBaseENSG00000137473
Genome Data Viewer NCBITTC29 [Mapview hg19]  
OMIM618735   618745   
Gene and transcription
Genbank (Entrez)AF345910 AK093145 AK225725 AK301807 AK314066
RefSeq transcript (Entrez)NM_001300761 NM_001317806 NM_031956
Consensus coding sequences : CCDS (NCBI)TTC29
Gene ExpressionTTC29 [ NCBI-GEO ]   TTC29 [ EBI - ARRAY_EXPRESS ]   TTC29 [ SEEK ]   TTC29 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC29 [ Firebrowse - Broad ]
GenevisibleExpression of TTC29 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83894
GTEX Portal (Tissue expression)TTC29
Human Protein AtlasENSG00000137473-TTC29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA56
PhosPhoSitePlusQ8NA56
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC29
SuperfamilyQ8NA56
AlphaFold pdb e-kbQ8NA56   
Human Protein Atlas [tissue]ENSG00000137473-TTC29 [tissue]
HPRD14866
Protein Interaction databases
DIP (DOE-UCLA)Q8NA56
IntAct (EBI)Q8NA56
BioGRIDTTC29
STRING (EMBL)TTC29
ZODIACTTC29
Ontologies - Pathways
QuickGOQ8NA56
Ontology : AmiGOcilium movement  cilium movement  cytoplasm  cytoskeleton  sperm flagellum  sperm flagellum  cilium organization  
Ontology : EGO-EBIcilium movement  cilium movement  cytoplasm  cytoskeleton  sperm flagellum  sperm flagellum  cilium organization  
NDEx NetworkTTC29
Atlas of Cancer Signalling NetworkTTC29
Wikipedia pathwaysTTC29
Orthology - Evolution
OrthoDB83894
GeneTree (enSembl)ENSG00000137473
Phylogenetic Trees/Animal Genes : TreeFamTTC29
Homologs : HomoloGeneTTC29
Homology/Alignments : Family Browser (UCSC)TTC29
Gene fusions - Rearrangements
Fusion : MitelmanRNF150/TTC29 [4q31.21/4q31.22]  
Fusion : MitelmanSLC10A7/TTC29 [4q31.22/4q31.22]  
Fusion : QuiverTTC29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC29
dbVarTTC29
ClinVarTTC29
MonarchTTC29
1000_GenomesTTC29 
Exome Variant ServerTTC29
GNOMAD BrowserENSG00000137473
Varsome BrowserTTC29
ACMGTTC29 variants
VarityQ8NA56
Genomic Variants (DGV)TTC29 [DGVbeta]
DECIPHERTTC29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC29 
Mutations
ICGC Data PortalTTC29 
TCGA Data PortalTTC29 
Broad Tumor PortalTTC29
OASIS PortalTTC29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC29  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC29
Mutations and Diseases : HGMDTTC29
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC29
DgiDB (Drug Gene Interaction Database)TTC29
DoCM (Curated mutations)TTC29
CIViC (Clinical Interpretations of Variants in Cancer)TTC29
Cancer3DTTC29
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618735    618745   
Orphanet
DisGeNETTTC29
MedgenTTC29
Genetic Testing Registry TTC29
NextProtQ8NA56 [Medical]
GENETestsTTC29
Target ValidationTTC29
Huge Navigator TTC29 [HugePedia]
ClinGenTTC29
Clinical trials, drugs, therapy
MyCancerGenomeTTC29
Protein Interactions : CTDTTC29
Pharm GKB GenePA145147799
PharosQ8NA56
Clinical trialTTC29
Miscellaneous
canSAR (ICR)TTC29
HarmonizomeTTC29
DataMed IndexTTC29
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:44 CEST 2021

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