Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC30A (tetratricopeptide repeat domain 30A)

Identity

Alias_symbol (synonym)FLJ13946
IFT70A
Other alias
HGNC (Hugo) TTC30A
LocusID (NCBI) 92104
Atlas_Id 75283
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 177614298 and ends at 177618966 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC30A   25853
Cards
Entrez_Gene (NCBI)TTC30A  92104  tetratricopeptide repeat domain 30A
AliasesIFT70A
GeneCards (Weizmann)TTC30A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:177614298-177618966 [Contig_View]  TTC30A [Vega]
TCGA cBioPortalTTC30A
AceView (NCBI)TTC30A
Genatlas (Paris)TTC30A
WikiGenes92104
SOURCE (Princeton)TTC30A
Genetics Home Reference (NIH)TTC30A
Genomic and cartography
GoldenPath hg38 (UCSC)TTC30A  -     chr2:177614298-177618966 -  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC30A  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblTTC30A - 2q31.2 [CytoView hg19]  TTC30A - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBITTC30A [Mapview hg19]  TTC30A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057530 AK125104 AK292395 AL049329 BC017695
RefSeq transcript (Entrez)NM_152275
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC30A
Cluster EST : UnigeneHs.128384 [ NCBI ]
CGAP (NCI)Hs.128384
Gene ExpressionTTC30A [ NCBI-GEO ]   TTC30A [ EBI - ARRAY_EXPRESS ]   TTC30A [ SEEK ]   TTC30A [ MEM ]
Gene Expression Viewer (FireBrowse)TTC30A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92104
GTEX Portal (Tissue expression)TTC30A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WT1
Splice isoforms : SwissVarQ86WT1
PhosPhoSitePlusQ86WT1
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC30A
DMDM Disease mutations92104
Blocks (Seattle)TTC30A
SuperfamilyQ86WT1
Peptide AtlasQ86WT1
HPRD08590
IPIIPI00478743   IPI01013832   
Protein Interaction databases
DIP (DOE-UCLA)Q86WT1
IntAct (EBI)Q86WT1
BioGRIDTTC30A
STRING (EMBL)TTC30A
ZODIACTTC30A
Ontologies - Pathways
QuickGOQ86WT1
Ontology : AmiGOcilium  intraciliary transport particle B  intraciliary transport  cilium assembly  
Ontology : EGO-EBIcilium  intraciliary transport particle B  intraciliary transport  cilium assembly  
NDEx NetworkTTC30A
Atlas of Cancer Signalling NetworkTTC30A
Wikipedia pathwaysTTC30A
Orthology - Evolution
OrthoDB92104
Phylogenetic Trees/Animal Genes : TreeFamTTC30A
HOVERGENQ86WT1
HOGENOMQ86WT1
Homologs : HomoloGeneTTC30A
Homology/Alignments : Family Browser (UCSC)TTC30A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC30A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC30A
dbVarTTC30A
ClinVarTTC30A
1000_GenomesTTC30A 
Exome Variant ServerTTC30A
ExAC (Exome Aggregation Consortium)TTC30A (select the gene name)
Genetic variants : HAPMAP92104
Genomic Variants (DGV)TTC30A [DGVbeta]
DECIPHERTTC30A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC30A 
Mutations
ICGC Data PortalTTC30A 
TCGA Data PortalTTC30A 
Broad Tumor PortalTTC30A
OASIS PortalTTC30A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC30A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC30A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC30A
DgiDB (Drug Gene Interaction Database)TTC30A
DoCM (Curated mutations)TTC30A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC30A (select a term)
intoGenTTC30A
Cancer3DTTC30A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC30A
Genetic Testing Registry TTC30A
NextProtQ86WT1 [Medical]
TSGene92104
GENETestsTTC30A
Target ValidationTTC30A
Huge Navigator TTC30A [HugePedia]
snp3D : Map Gene to Disease92104
BioCentury BCIQTTC30A
ClinGenTTC30A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92104
Chemical/Pharm GKB GenePA145147829
Clinical trialTTC30A
Miscellaneous
canSAR (ICR)TTC30A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC30A
EVEXTTC30A
GoPubMedTTC30A
iHOPTTC30A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:49 CEST 2017

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