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TTC30B (tetratricopeptide repeat domain 30B)

Identity

Alias_symbol (synonym)FLJ30990
fleer
IFT70B
Other aliasIFT70
HGNC (Hugo) TTC30B
LocusID (NCBI) 150737
Atlas_Id 75284
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 177550153 and ends at 177552796 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC30B   26425
Cards
Entrez_Gene (NCBI)TTC30B  150737  tetratricopeptide repeat domain 30B
AliasesIFT70; IFT70B; fleer
GeneCards (Weizmann)TTC30B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:177550153-177552796 [Contig_View]  TTC30B [Vega]
TCGA cBioPortalTTC30B
AceView (NCBI)TTC30B
Genatlas (Paris)TTC30B
WikiGenes150737
SOURCE (Princeton)TTC30B
Genetics Home Reference (NIH)TTC30B
Genomic and cartography
GoldenPath hg38 (UCSC)TTC30B  -     chr2:177550153-177552796 -  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC30B  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblTTC30B - 2q31.2 [CytoView hg19]  TTC30B - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBITTC30B [Mapview hg19]  TTC30B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI498353 AK055552 AK296828 AW007843 BC033795
RefSeq transcript (Entrez)NM_152517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC30B
Cluster EST : UnigeneHs.447659 [ NCBI ]
CGAP (NCI)Hs.447659
Gene ExpressionTTC30B [ NCBI-GEO ]   TTC30B [ EBI - ARRAY_EXPRESS ]   TTC30B [ SEEK ]   TTC30B [ MEM ]
Gene Expression Viewer (FireBrowse)TTC30B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150737
GTEX Portal (Tissue expression)TTC30B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4P2
Splice isoforms : SwissVarQ8N4P2
PhosPhoSitePlusQ8N4P2
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC30B
DMDM Disease mutations150737
Blocks (Seattle)TTC30B
SuperfamilyQ8N4P2
Peptide AtlasQ8N4P2
HPRD08706
IPIIPI00384481   IPI01015499   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4P2
IntAct (EBI)Q8N4P2
BioGRIDTTC30B
STRING (EMBL)TTC30B
ZODIACTTC30B
Ontologies - Pathways
QuickGOQ8N4P2
Ontology : AmiGOprotein binding  cilium  cilium  intraciliary transport particle B  intraciliary transport involved in cilium assembly  intraciliary transport  cilium assembly  ciliary tip  
Ontology : EGO-EBIprotein binding  cilium  cilium  intraciliary transport particle B  intraciliary transport involved in cilium assembly  intraciliary transport  cilium assembly  ciliary tip  
NDEx NetworkTTC30B
Atlas of Cancer Signalling NetworkTTC30B
Wikipedia pathwaysTTC30B
Orthology - Evolution
OrthoDB150737
Phylogenetic Trees/Animal Genes : TreeFamTTC30B
HOVERGENQ8N4P2
HOGENOMQ8N4P2
Homologs : HomoloGeneTTC30B
Homology/Alignments : Family Browser (UCSC)TTC30B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC30B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC30B
dbVarTTC30B
ClinVarTTC30B
1000_GenomesTTC30B 
Exome Variant ServerTTC30B
ExAC (Exome Aggregation Consortium)TTC30B (select the gene name)
Genetic variants : HAPMAP150737
Genomic Variants (DGV)TTC30B [DGVbeta]
DECIPHERTTC30B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC30B 
Mutations
ICGC Data PortalTTC30B 
TCGA Data PortalTTC30B 
Broad Tumor PortalTTC30B
OASIS PortalTTC30B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC30B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC30B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC30B
DgiDB (Drug Gene Interaction Database)TTC30B
DoCM (Curated mutations)TTC30B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC30B (select a term)
intoGenTTC30B
Cancer3DTTC30B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC30B
Genetic Testing Registry TTC30B
NextProtQ8N4P2 [Medical]
TSGene150737
GENETestsTTC30B
Target ValidationTTC30B
Huge Navigator TTC30B [HugePedia]
snp3D : Map Gene to Disease150737
BioCentury BCIQTTC30B
ClinGenTTC30B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150737
Chemical/Pharm GKB GenePA145147835
Clinical trialTTC30B
Miscellaneous
canSAR (ICR)TTC30B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC30B
EVEXTTC30B
GoPubMedTTC30B
iHOPTTC30B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:32 CEST 2017

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