Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC31 (tetratricopeptide repeat domain 31)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC31
HGNC Alias symbFLJ12788
LocusID (NCBI) 64427
Atlas_Id 75285
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74483081 and ends at 74494559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MGAT3 (22q13.1) / TTC31 (2p13.1)TTC31 (2p13.1) / OSBPL2 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC31   25759
Cards
Entrez_Gene (NCBI)TTC31    tetratricopeptide repeat domain 31
Aliases
GeneCards (Weizmann)TTC31
Ensembl hg19 (Hinxton)ENSG00000115282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115282 [Gene_View]  ENSG00000115282 [Sequence]  chr2:74483081-74494559 [Contig_View]  TTC31 [Vega]
ICGC DataPortalENSG00000115282
TCGA cBioPortalTTC31
AceView (NCBI)TTC31
Genatlas (Paris)TTC31
SOURCE (Princeton)TTC31
Genetics Home Reference (NIH)TTC31
Genomic and cartography
GoldenPath hg38 (UCSC)TTC31  -     chr2:74483081-74494559 +  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC31  -     2p13.1   [Description]    (hg19-Feb_2009)
GoldenPathTTC31 - 2p13.1 [CytoView hg19]  TTC31 - 2p13.1 [CytoView hg38]
ImmunoBaseENSG00000115282
Genome Data Viewer NCBITTC31 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK022850 AK026819 AK090520 AK223355 AK225626
RefSeq transcript (Entrez)NM_001376129 NM_001376130 NM_001376132 NM_001376133 NM_001376134 NM_001376135 NM_001376136 NM_001376137 NM_001376138 NM_001376139 NM_001376140 NM_001376141 NM_001376144 NM_001376145 NM_022492
Consensus coding sequences : CCDS (NCBI)TTC31
Gene ExpressionTTC31 [ NCBI-GEO ]   TTC31 [ EBI - ARRAY_EXPRESS ]   TTC31 [ SEEK ]   TTC31 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC31 [ Firebrowse - Broad ]
GenevisibleExpression of TTC31 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64427
GTEX Portal (Tissue expression)TTC31
Human Protein AtlasENSG00000115282-TTC31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AM3
PhosPhoSitePlusQ49AM3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC31
SuperfamilyQ49AM3
AlphaFold pdb e-kbQ49AM3   
Human Protein Atlas [tissue]ENSG00000115282-TTC31 [tissue]
HPRD07797
Protein Interaction databases
DIP (DOE-UCLA)Q49AM3
IntAct (EBI)Q49AM3
BioGRIDTTC31
STRING (EMBL)TTC31
ZODIACTTC31
Ontologies - Pathways
QuickGOQ49AM3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC31
Atlas of Cancer Signalling NetworkTTC31
Wikipedia pathwaysTTC31
Orthology - Evolution
OrthoDB64427
GeneTree (enSembl)ENSG00000115282
Phylogenetic Trees/Animal Genes : TreeFamTTC31
Homologs : HomoloGeneTTC31
Homology/Alignments : Family Browser (UCSC)TTC31
Gene fusions - Rearrangements
Fusion : QuiverTTC31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC31
dbVarTTC31
ClinVarTTC31
MonarchTTC31
1000_GenomesTTC31 
Exome Variant ServerTTC31
GNOMAD BrowserENSG00000115282
Varsome BrowserTTC31
ACMGTTC31 variants
VarityQ49AM3
Genomic Variants (DGV)TTC31 [DGVbeta]
DECIPHERTTC31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC31 
Mutations
ICGC Data PortalTTC31 
TCGA Data PortalTTC31 
Broad Tumor PortalTTC31
OASIS PortalTTC31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC31  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC31
Mutations and Diseases : HGMDTTC31
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC31
DgiDB (Drug Gene Interaction Database)TTC31
DoCM (Curated mutations)TTC31
CIViC (Clinical Interpretations of Variants in Cancer)TTC31
Cancer3DTTC31
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC31
MedgenTTC31
Genetic Testing Registry TTC31
NextProtQ49AM3 [Medical]
GENETestsTTC31
Target ValidationTTC31
Huge Navigator TTC31 [HugePedia]
ClinGenTTC31
Clinical trials, drugs, therapy
MyCancerGenomeTTC31
Protein Interactions : CTDTTC31
Pharm GKB GenePA145147843
PharosQ49AM3
Clinical trialTTC31
Miscellaneous
canSAR (ICR)TTC31
HarmonizomeTTC31
DataMed IndexTTC31
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:18 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.