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TTC31 (tetratricopeptide repeat domain 31)

Identity

Alias_symbol (synonym)FLJ12788
Other alias-
HGNC (Hugo) TTC31
LocusID (NCBI) 64427
Atlas_Id 75285
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74710200 and ends at 74721691 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MGAT3 (22q13.1) / TTC31 (2p13.1)TTC31 (2p13.1) / OSBPL2 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC31   25759
Cards
Entrez_Gene (NCBI)TTC31  64427  tetratricopeptide repeat domain 31
Aliases
GeneCards (Weizmann)TTC31
Ensembl hg19 (Hinxton)ENSG00000115282 [Gene_View]  chr2:74710200-74721691 [Contig_View]  TTC31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115282 [Gene_View]  chr2:74710200-74721691 [Contig_View]  TTC31 [Vega]
ICGC DataPortalENSG00000115282
TCGA cBioPortalTTC31
AceView (NCBI)TTC31
Genatlas (Paris)TTC31
WikiGenes64427
SOURCE (Princeton)TTC31
Genetics Home Reference (NIH)TTC31
Genomic and cartography
GoldenPath hg19 (UCSC)TTC31  -     chr2:74710200-74721691 +  2p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTC31  -     2p13.1   [Description]    (hg38-Dec_2013)
EnsemblTTC31 - 2p13.1 [CytoView hg19]  TTC31 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBITTC31 [Mapview hg19]  TTC31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022850 AK026819 AK090520 AK223355 AK225626
RefSeq transcript (Entrez)NM_022492
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)TTC31
Cluster EST : UnigeneHs.557709 [ NCBI ]
CGAP (NCI)Hs.557709
Alternative Splicing GalleryENSG00000115282
Gene ExpressionTTC31 [ NCBI-GEO ]   TTC31 [ EBI - ARRAY_EXPRESS ]   TTC31 [ SEEK ]   TTC31 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64427
GTEX Portal (Tissue expression)TTC31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AM3
Splice isoforms : SwissVarQ49AM3
PhosPhoSitePlusQ49AM3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC31
DMDM Disease mutations64427
Blocks (Seattle)TTC31
SuperfamilyQ49AM3
Human Protein AtlasENSG00000115282
Peptide AtlasQ49AM3
HPRD07797
IPIIPI00829688   IPI00908341   IPI00908540   IPI00910369   IPI00903100   IPI00645467   IPI00384549   IPI00916477   IPI00926885   
Protein Interaction databases
DIP (DOE-UCLA)Q49AM3
IntAct (EBI)Q49AM3
FunCoupENSG00000115282
BioGRIDTTC31
STRING (EMBL)TTC31
ZODIACTTC31
Ontologies - Pathways
QuickGOQ49AM3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC31
Atlas of Cancer Signalling NetworkTTC31
Wikipedia pathwaysTTC31
Orthology - Evolution
OrthoDB64427
GeneTree (enSembl)ENSG00000115282
Phylogenetic Trees/Animal Genes : TreeFamTTC31
HOVERGENQ49AM3
HOGENOMQ49AM3
Homologs : HomoloGeneTTC31
Homology/Alignments : Family Browser (UCSC)TTC31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC31
dbVarTTC31
ClinVarTTC31
1000_GenomesTTC31 
Exome Variant ServerTTC31
ExAC (Exome Aggregation Consortium)TTC31 (select the gene name)
Genetic variants : HAPMAP64427
Genomic Variants (DGV)TTC31 [DGVbeta]
DECIPHER (Syndromes)2:74710200-74721691  ENSG00000115282
CONAN: Copy Number AnalysisTTC31 
Mutations
ICGC Data PortalTTC31 
TCGA Data PortalTTC31 
Broad Tumor PortalTTC31
OASIS PortalTTC31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC31
DgiDB (Drug Gene Interaction Database)TTC31
DoCM (Curated mutations)TTC31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC31 (select a term)
intoGenTTC31
Cancer3DTTC31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC31
Genetic Testing Registry TTC31
NextProtQ49AM3 [Medical]
TSGene64427
GENETestsTTC31
Huge Navigator TTC31 [HugePedia]
snp3D : Map Gene to Disease64427
BioCentury BCIQTTC31
ClinGenTTC31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64427
Chemical/Pharm GKB GenePA145147843
Clinical trialTTC31
Miscellaneous
canSAR (ICR)TTC31 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC31
EVEXTTC31
GoPubMedTTC31
iHOPTTC31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:09 CET 2017

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