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TTC32 (tetratricopeptide repeat domain 32)

Identity

Other alias-
HGNC (Hugo) TTC32
LocusID (NCBI) 130502
Atlas_Id 75286
Location 2p24.1  [Link to chromosome band 2p24]
Location_base_pair Starts at 19896631 and ends at 19901986 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC32   32954
Cards
Entrez_Gene (NCBI)TTC32  130502  tetratricopeptide repeat domain 32
Aliases
GeneCards (Weizmann)TTC32
Ensembl hg19 (Hinxton)ENSG00000183891 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183891 [Gene_View]  chr2:19896631-19901986 [Contig_View]  TTC32 [Vega]
ICGC DataPortalENSG00000183891
TCGA cBioPortalTTC32
AceView (NCBI)TTC32
Genatlas (Paris)TTC32
WikiGenes130502
SOURCE (Princeton)TTC32
Genetics Home Reference (NIH)TTC32
Genomic and cartography
GoldenPath hg38 (UCSC)TTC32  -     chr2:19896631-19901986 -  2p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC32  -     2p24.1   [Description]    (hg19-Feb_2009)
EnsemblTTC32 - 2p24.1 [CytoView hg19]  TTC32 - 2p24.1 [CytoView hg38]
Mapping of homologs : NCBITTC32 [Mapview hg19]  TTC32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI366807 BC050088 BC057850 BC070381 HQ447476
RefSeq transcript (Entrez)NM_001008237
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC32
Cluster EST : UnigeneHs.591547 [ NCBI ]
CGAP (NCI)Hs.591547
Alternative Splicing GalleryENSG00000183891
Gene ExpressionTTC32 [ NCBI-GEO ]   TTC32 [ EBI - ARRAY_EXPRESS ]   TTC32 [ SEEK ]   TTC32 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130502
GTEX Portal (Tissue expression)TTC32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5I0X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5I0X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5I0X7
Splice isoforms : SwissVarQ5I0X7
PhosPhoSitePlusQ5I0X7
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC32
DMDM Disease mutations130502
Blocks (Seattle)TTC32
SuperfamilyQ5I0X7
Human Protein AtlasENSG00000183891
Peptide AtlasQ5I0X7
HPRD17296
IPIIPI00041513   IPI00893822   IPI00893955   
Protein Interaction databases
DIP (DOE-UCLA)Q5I0X7
IntAct (EBI)Q5I0X7
FunCoupENSG00000183891
BioGRIDTTC32
STRING (EMBL)TTC32
ZODIACTTC32
Ontologies - Pathways
QuickGOQ5I0X7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTTC32
Atlas of Cancer Signalling NetworkTTC32
Wikipedia pathwaysTTC32
Orthology - Evolution
OrthoDB130502
GeneTree (enSembl)ENSG00000183891
Phylogenetic Trees/Animal Genes : TreeFamTTC32
HOVERGENQ5I0X7
HOGENOMQ5I0X7
Homologs : HomoloGeneTTC32
Homology/Alignments : Family Browser (UCSC)TTC32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC32
dbVarTTC32
ClinVarTTC32
1000_GenomesTTC32 
Exome Variant ServerTTC32
ExAC (Exome Aggregation Consortium)TTC32 (select the gene name)
Genetic variants : HAPMAP130502
Genomic Variants (DGV)TTC32 [DGVbeta]
DECIPHERTTC32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC32 
Mutations
ICGC Data PortalTTC32 
TCGA Data PortalTTC32 
Broad Tumor PortalTTC32
OASIS PortalTTC32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC32
DgiDB (Drug Gene Interaction Database)TTC32
DoCM (Curated mutations)TTC32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC32 (select a term)
intoGenTTC32
Cancer3DTTC32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC32
Genetic Testing Registry TTC32
NextProtQ5I0X7 [Medical]
TSGene130502
GENETestsTTC32
Target ValidationTTC32
Huge Navigator TTC32 [HugePedia]
snp3D : Map Gene to Disease130502
BioCentury BCIQTTC32
ClinGenTTC32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130502
Chemical/Pharm GKB GenePA145147867
Clinical trialTTC32
Miscellaneous
canSAR (ICR)TTC32 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC32
EVEXTTC32
GoPubMedTTC32
iHOPTTC32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:32 CEST 2017

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