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TTC33 (tetratricopeptide repeat domain 33)

Identity

Alias_symbol (synonym)OSRF
Other alias
HGNC (Hugo) TTC33
LocusID (NCBI) 23548
Atlas_Id 75287
Location 5p13.1  [Link to chromosome band 5p13]
Location_base_pair Starts at 40711576 and ends at 40755970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRKAA1 (5p13.1) / TTC33 (5p13.1)TTC33 (5p13.1) / AC008810.1 ()TTC33 (5p13.1) / ADAM19 (5q33.3)
TTC33 (5p13.1) / GRM5 (11q14.2)TTC33 AC008810.1TTC33 ADAM19
TTC33 GRM5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC33   29959
Cards
Entrez_Gene (NCBI)TTC33  23548  tetratricopeptide repeat domain 33
AliasesOSRF
GeneCards (Weizmann)TTC33
Ensembl hg19 (Hinxton)ENSG00000113638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113638 [Gene_View]  chr5:40711576-40755970 [Contig_View]  TTC33 [Vega]
ICGC DataPortalENSG00000113638
TCGA cBioPortalTTC33
AceView (NCBI)TTC33
Genatlas (Paris)TTC33
WikiGenes23548
SOURCE (Princeton)TTC33
Genetics Home Reference (NIH)TTC33
Genomic and cartography
GoldenPath hg38 (UCSC)TTC33  -     chr5:40711576-40755970 -  5p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC33  -     5p13.1   [Description]    (hg19-Feb_2009)
EnsemblTTC33 - 5p13.1 [CytoView hg19]  TTC33 - 5p13.1 [CytoView hg38]
Mapping of homologs : NCBITTC33 [Mapview hg19]  TTC33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF023244 AF130073 AI174764 AK303119 AK307131
RefSeq transcript (Entrez)NM_012382
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC33
Cluster EST : UnigeneHs.621357 [ NCBI ]
CGAP (NCI)Hs.621357
Alternative Splicing GalleryENSG00000113638
Gene ExpressionTTC33 [ NCBI-GEO ]   TTC33 [ EBI - ARRAY_EXPRESS ]   TTC33 [ SEEK ]   TTC33 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23548
GTEX Portal (Tissue expression)TTC33
Human Protein AtlasENSG00000113638-TTC33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PID6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PID6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PID6
Splice isoforms : SwissVarQ6PID6
PhosPhoSitePlusQ6PID6
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC33
DMDM Disease mutations23548
Blocks (Seattle)TTC33
SuperfamilyQ6PID6
Human Protein Atlas [tissue]ENSG00000113638-TTC33 [tissue]
Peptide AtlasQ6PID6
HPRD17807
IPIIPI00018208   IPI00385925   
Protein Interaction databases
DIP (DOE-UCLA)Q6PID6
IntAct (EBI)Q6PID6
FunCoupENSG00000113638
BioGRIDTTC33
STRING (EMBL)TTC33
ZODIACTTC33
Ontologies - Pathways
QuickGOQ6PID6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTTC33
Atlas of Cancer Signalling NetworkTTC33
Wikipedia pathwaysTTC33
Orthology - Evolution
OrthoDB23548
GeneTree (enSembl)ENSG00000113638
Phylogenetic Trees/Animal Genes : TreeFamTTC33
HOVERGENQ6PID6
HOGENOMQ6PID6
Homologs : HomoloGeneTTC33
Homology/Alignments : Family Browser (UCSC)TTC33
Gene fusions - Rearrangements
Fusion: TCGA_MDACCTTC33 AC008810.1
Fusion: TCGA_MDACCTTC33 ADAM19
Fusion: TCGA_MDACCTTC33 GRM5
Tumor Fusion PortalTTC33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC33
dbVarTTC33
ClinVarTTC33
1000_GenomesTTC33 
Exome Variant ServerTTC33
ExAC (Exome Aggregation Consortium)ENSG00000113638
GNOMAD BrowserENSG00000113638
Genetic variants : HAPMAP23548
Genomic Variants (DGV)TTC33 [DGVbeta]
DECIPHERTTC33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC33 
Mutations
ICGC Data PortalTTC33 
TCGA Data PortalTTC33 
Broad Tumor PortalTTC33
OASIS PortalTTC33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC33
DgiDB (Drug Gene Interaction Database)TTC33
DoCM (Curated mutations)TTC33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC33 (select a term)
intoGenTTC33
Cancer3DTTC33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC33
MedgenTTC33
Genetic Testing Registry TTC33
NextProtQ6PID6 [Medical]
TSGene23548
GENETestsTTC33
Target ValidationTTC33
Huge Navigator TTC33 [HugePedia]
snp3D : Map Gene to Disease23548
BioCentury BCIQTTC33
ClinGenTTC33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23548
Chemical/Pharm GKB GenePA162407196
Clinical trialTTC33
Miscellaneous
canSAR (ICR)TTC33 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC33
EVEXTTC33
GoPubMedTTC33
iHOPTTC33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:13:20 CET 2017

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