Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC34 (tetratricopeptide repeat domain 34)

Identity

Other alias-
HGNC (Hugo) TTC34
LocusID (NCBI) 100287898
Atlas_Id 75288
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2641368 and ends at 2789665 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACOT7 (1p36.31) / TTC34 (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC34   34297
Cards
Entrez_Gene (NCBI)TTC34  100287898  tetratricopeptide repeat domain 34
Aliases
GeneCards (Weizmann)TTC34
Ensembl hg19 (Hinxton)ENSG00000215912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215912 [Gene_View]  chr1:2641368-2789665 [Contig_View]  TTC34 [Vega]
ICGC DataPortalENSG00000215912
TCGA cBioPortalTTC34
AceView (NCBI)TTC34
Genatlas (Paris)TTC34
WikiGenes100287898
SOURCE (Princeton)TTC34
Genetics Home Reference (NIH)TTC34
Genomic and cartography
GoldenPath hg38 (UCSC)TTC34  -     chr1:2641368-2789665 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC34  -     1p36.32   [Description]    (hg19-Feb_2009)
EnsemblTTC34 - 1p36.32 [CytoView hg19]  TTC34 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBITTC34 [Mapview hg19]  TTC34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DY655627
RefSeq transcript (Entrez)NM_001242672
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187515
Consensus coding sequences : CCDS (NCBI)TTC34
Cluster EST : UnigeneHs.632363 [ NCBI ]
CGAP (NCI)Hs.632363
Alternative Splicing GalleryENSG00000215912
Gene ExpressionTTC34 [ NCBI-GEO ]   TTC34 [ EBI - ARRAY_EXPRESS ]   TTC34 [ SEEK ]   TTC34 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287898
GTEX Portal (Tissue expression)TTC34
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYJ7
Splice isoforms : SwissVarA8MYJ7
PhosPhoSitePlusA8MYJ7
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC34
DMDM Disease mutations100287898
Blocks (Seattle)TTC34
SuperfamilyA8MYJ7
Human Protein AtlasENSG00000215912
Peptide AtlasA8MYJ7
IPIIPI00873126   
Protein Interaction databases
DIP (DOE-UCLA)A8MYJ7
IntAct (EBI)A8MYJ7
FunCoupENSG00000215912
BioGRIDTTC34
STRING (EMBL)TTC34
ZODIACTTC34
Ontologies - Pathways
QuickGOA8MYJ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC34
Atlas of Cancer Signalling NetworkTTC34
Wikipedia pathwaysTTC34
Orthology - Evolution
OrthoDB100287898
GeneTree (enSembl)ENSG00000215912
Phylogenetic Trees/Animal Genes : TreeFamTTC34
HOVERGENA8MYJ7
HOGENOMA8MYJ7
Homologs : HomoloGeneTTC34
Homology/Alignments : Family Browser (UCSC)TTC34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC34
dbVarTTC34
ClinVarTTC34
1000_GenomesTTC34 
Exome Variant ServerTTC34
ExAC (Exome Aggregation Consortium)TTC34 (select the gene name)
Genetic variants : HAPMAP100287898
Genomic Variants (DGV)TTC34 [DGVbeta]
DECIPHERTTC34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC34 
Mutations
ICGC Data PortalTTC34 
TCGA Data PortalTTC34 
Broad Tumor PortalTTC34
OASIS PortalTTC34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC34
DgiDB (Drug Gene Interaction Database)TTC34
DoCM (Curated mutations)TTC34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC34 (select a term)
intoGenTTC34
Cancer3DTTC34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC34
Genetic Testing Registry TTC34
NextProtA8MYJ7 [Medical]
TSGene100287898
GENETestsTTC34
Target ValidationTTC34
Huge Navigator TTC34 [HugePedia]
snp3D : Map Gene to Disease100287898
BioCentury BCIQTTC34
ClinGenTTC34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287898
Chemical/Pharm GKB GenePA162407211
Clinical trialTTC34
Miscellaneous
canSAR (ICR)TTC34 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC34
EVEXTTC34
GoPubMedTTC34
iHOPTTC34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.