Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC34 (tetratricopeptide repeat domain 34)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC34
LocusID (NCBI) 100287898
Atlas_Id 75288
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2641269 and ends at 2800868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT7 (1p36.31) / TTC34 (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC34   34297
Cards
Entrez_Gene (NCBI)TTC34    tetratricopeptide repeat domain 34
Aliases
GeneCards (Weizmann)TTC34
Ensembl hg19 (Hinxton)ENSG00000215912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215912 [Gene_View]  ENSG00000215912 [Sequence]  chr1:2641269-2800868 [Contig_View]  TTC34 [Vega]
ICGC DataPortalENSG00000215912
TCGA cBioPortalTTC34
AceView (NCBI)TTC34
Genatlas (Paris)TTC34
SOURCE (Princeton)TTC34
Genetics Home Reference (NIH)TTC34
Genomic and cartography
GoldenPath hg38 (UCSC)TTC34  -     chr1:2641269-2800868 -  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC34  -     1p36.32   [Description]    (hg19-Feb_2009)
GoldenPathTTC34 - 1p36.32 [CytoView hg19]  TTC34 - 1p36.32 [CytoView hg38]
ImmunoBaseENSG00000215912
Genome Data Viewer NCBITTC34 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)DY655627
RefSeq transcript (Entrez)NM_001242672
Consensus coding sequences : CCDS (NCBI)TTC34
Gene ExpressionTTC34 [ NCBI-GEO ]   TTC34 [ EBI - ARRAY_EXPRESS ]   TTC34 [ SEEK ]   TTC34 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC34 [ Firebrowse - Broad ]
GenevisibleExpression of TTC34 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287898
GTEX Portal (Tissue expression)TTC34
Human Protein AtlasENSG00000215912-TTC34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYJ7
PhosPhoSitePlusA8MYJ7
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat    TTC34   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC34
SuperfamilyA8MYJ7
AlphaFold pdb e-kbA8MYJ7   
Human Protein Atlas [tissue]ENSG00000215912-TTC34 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A8MYJ7
IntAct (EBI)A8MYJ7
BioGRIDTTC34
STRING (EMBL)TTC34
ZODIACTTC34
Ontologies - Pathways
QuickGOA8MYJ7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC34
Atlas of Cancer Signalling NetworkTTC34
Wikipedia pathwaysTTC34
Orthology - Evolution
OrthoDB100287898
GeneTree (enSembl)ENSG00000215912
Phylogenetic Trees/Animal Genes : TreeFamTTC34
Homologs : HomoloGeneTTC34
Homology/Alignments : Family Browser (UCSC)TTC34
Gene fusions - Rearrangements
Fusion : QuiverTTC34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC34
dbVarTTC34
ClinVarTTC34
MonarchTTC34
1000_GenomesTTC34 
Exome Variant ServerTTC34
GNOMAD BrowserENSG00000215912
Varsome BrowserTTC34
ACMGTTC34 variants
VarityA8MYJ7
Genomic Variants (DGV)TTC34 [DGVbeta]
DECIPHERTTC34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC34 
Mutations
ICGC Data PortalTTC34 
TCGA Data PortalTTC34 
Broad Tumor PortalTTC34
OASIS PortalTTC34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC34  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC34
Mutations and Diseases : HGMDTTC34
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC34
DgiDB (Drug Gene Interaction Database)TTC34
DoCM (Curated mutations)TTC34
CIViC (Clinical Interpretations of Variants in Cancer)TTC34
Cancer3DTTC34
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC34
MedgenTTC34
Genetic Testing Registry TTC34
NextProtA8MYJ7 [Medical]
GENETestsTTC34
Target ValidationTTC34
Huge Navigator TTC34 [HugePedia]
ClinGenTTC34
Clinical trials, drugs, therapy
MyCancerGenomeTTC34
Protein Interactions : CTDTTC34
Pharm GKB GenePA162407211
PharosA8MYJ7
Clinical trialTTC34
Miscellaneous
canSAR (ICR)TTC34
HarmonizomeTTC34
DataMed IndexTTC34
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:18 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.