Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TTC36 (tetratricopeptide repeat domain 36)

Identity

Other namesHBP21
HGNC (Hugo) TTC36
LocusID (NCBI) 143941
Location 11q23.3
Location_base_pair Starts at 118398210 and ends at 118401740 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TTC36   33708
Entrez_Gene (NCBI)TTC36  143941  tetratricopeptide repeat domain 36
Cards
GeneCards (Weizmann)TTC36
Ensembl (Hinxton)ENSG00000172425 [Gene_View]  chr11:118398210-118401740 [Contig_View]  TTC36 [Vega]
AceView (NCBI)TTC36
Genatlas (Paris)TTC36
SOURCE (Stanford)NM_001080441
Genomic and cartography
GoldenPath (UCSC)TTC36  -  11q23.3   chr11:118398210-118401740 +  11q23.3   [Description]    (hg19-Feb_2009)
EnsemblTTC36 - 11q23.3 [CytoView]
Mapping of homologs : NCBITTC36 [Mapview]
Gene and transcription
Genbank (Entrez)BC146916 BC146921 BC171906 BC171913 EU489483
RefSeq transcript (SRS)NM_001080441
RefSeq transcript (Entrez)NM_001080441
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_033899 NW_001838042 NW_003871072 NW_004078073
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_033899 NW_001838042 NW_003871072 NW_004078073
Consensus coding sequences : CCDS (NCBI)TTC36
Cluster EST : UnigeneHs.653449 [ SRS ] Hs.653449 [ NCBI ]
CGAP (NCI)Hs.653449
Alternative Splicing : Fast-db (Paris)GSHG0033176
Alternative Splicing GalleryENSG00000172425
Gene ExpressionTTC36 [ NCBI-GEO ]   TTC36 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLP5 (SRS) A6NLP5 (Uniprot)
NextProtA6NLP5
With graphics : InterProA6NLP5
Splice isoforms : SwissVarA6NLP5(Swissvar)
Domaine pattern : Prosite (SRS)TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)TPR-contain_dom    TPR-like_helical    TPR_2    TPR_repeat   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical    TPR_2    TPR_repeat   
Related proteins : CluSTrA6NLP5
Domain families : Pfam (SRS)TPR_2 (PF07719)   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
DMDM143941
Blocks (Seattle)A6NLP5
Human Protein AtlasENSG00000172425
IPIIPI00163879   IPI01014746   IPI00977850   
Protein Interaction databases
DIP (DOE-UCLA)A6NLP5
IntAct (EBI)A6NLP5
FunCoupENSG00000172425
REACTOMETTC36
Protein Interaction Database143941
BioGRIDTTC36
InParanoidA6NLP5
Interologous Interaction database A6NLP5
IntegromeDBTTC36
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TTC36
SNP (GeneSNP Utah)TTC36
SNP : HGBaseTTC36
Genetic variants : HAPMAPTTC36
Somatic Mutations in Cancer : COSMICTTC36 
CONAN: Copy Number AnalysisTTC36 
Mutations and Diseases : HGMDTTC36
OMIM
GENETests
Disease Genetic AssociationTTC36
Huge Navigator TTC36 [HugePedia]  TTC36 [HugeCancerGEM]
Genomic VariantsTTC36  TTC36 [DGVbeta]
snp3D : Map Gene to Disease143941
General knowledge
Homologs : HomoloGeneTTC36
Homology/Alignments : Family Browser (UCSC)TTC36
Phylogenetic Trees/Animal Genes : TreeFamTTC36
Chemical/Protein Interactions : CTD143941
Chemical/Pharm GKB GenePA162407225
Clinical trialTTC36
Cancer Resource (Charite)ENSG00000172425
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
PubGeneTTC36
iHOPTTC36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:57 CEST 2013
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