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TTC38 (tetratricopeptide repeat domain 38)

Identity

Alias_symbol (synonym)FLJ20699
Other aliasLL22NC03-5H6.5
HGNC (Hugo) TTC38
LocusID (NCBI) 55020
Atlas_Id 75290
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46663861 and ends at 46689905 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRMU (22q13.31) / TTC38 (22q13.31)UNC5A (5q35.2) / TTC38 (22q13.31)TRMU TTC38
UNC5A TTC38

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC38   26082
Cards
Entrez_Gene (NCBI)TTC38  55020  tetratricopeptide repeat domain 38
AliasesLL22NC03-5H6.5
GeneCards (Weizmann)TTC38
Ensembl hg19 (Hinxton)ENSG00000075234 [Gene_View]  chr22:46663861-46689905 [Contig_View]  TTC38 [Vega]
Ensembl hg38 (Hinxton)ENSG00000075234 [Gene_View]  chr22:46663861-46689905 [Contig_View]  TTC38 [Vega]
ICGC DataPortalENSG00000075234
TCGA cBioPortalTTC38
AceView (NCBI)TTC38
Genatlas (Paris)TTC38
WikiGenes55020
SOURCE (Princeton)TTC38
Genetics Home Reference (NIH)TTC38
Genomic and cartography
GoldenPath hg19 (UCSC)TTC38  -     chr22:46663861-46689905 +  22q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTC38  -     22q13.31   [Description]    (hg38-Dec_2013)
EnsemblTTC38 - 22q13.31 [CytoView hg19]  TTC38 - 22q13.31 [CytoView hg38]
Mapping of homologs : NCBITTC38 [Mapview hg19]  TTC38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI243497 AK000706 AK300606 BC018918 DA762669
RefSeq transcript (Entrez)NM_017931
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)TTC38
Cluster EST : UnigeneHs.435832 [ NCBI ]
CGAP (NCI)Hs.435832
Alternative Splicing GalleryENSG00000075234
Gene ExpressionTTC38 [ NCBI-GEO ]   TTC38 [ EBI - ARRAY_EXPRESS ]   TTC38 [ SEEK ]   TTC38 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55020
GTEX Portal (Tissue expression)TTC38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R3I4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5R3I4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5R3I4
Splice isoforms : SwissVarQ5R3I4
PhosPhoSitePlusQ5R3I4
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC38
DMDM Disease mutations55020
Blocks (Seattle)TTC38
SuperfamilyQ5R3I4
Human Protein AtlasENSG00000075234
Peptide AtlasQ5R3I4
HPRD07943
IPIIPI00550644   IPI00910722   IPI00879764   IPI00877593   IPI00880058   IPI00877947   
Protein Interaction databases
DIP (DOE-UCLA)Q5R3I4
IntAct (EBI)Q5R3I4
FunCoupENSG00000075234
BioGRIDTTC38
STRING (EMBL)TTC38
ZODIACTTC38
Ontologies - Pathways
QuickGOQ5R3I4
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkTTC38
Atlas of Cancer Signalling NetworkTTC38
Wikipedia pathwaysTTC38
Orthology - Evolution
OrthoDB55020
GeneTree (enSembl)ENSG00000075234
Phylogenetic Trees/Animal Genes : TreeFamTTC38
HOVERGENQ5R3I4
HOGENOMQ5R3I4
Homologs : HomoloGeneTTC38
Homology/Alignments : Family Browser (UCSC)TTC38
Gene fusions - Rearrangements
Fusion: TCGATRMU TTC38
Fusion: TCGAUNC5A TTC38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC38
dbVarTTC38
ClinVarTTC38
1000_GenomesTTC38 
Exome Variant ServerTTC38
ExAC (Exome Aggregation Consortium)TTC38 (select the gene name)
Genetic variants : HAPMAP55020
Genomic Variants (DGV)TTC38 [DGVbeta]
DECIPHER (Syndromes)22:46663861-46689905  ENSG00000075234
CONAN: Copy Number AnalysisTTC38 
Mutations
ICGC Data PortalTTC38 
TCGA Data PortalTTC38 
Broad Tumor PortalTTC38
OASIS PortalTTC38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC38
DgiDB (Drug Gene Interaction Database)TTC38
DoCM (Curated mutations)TTC38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC38 (select a term)
intoGenTTC38
Cancer3DTTC38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC38
Genetic Testing Registry TTC38
NextProtQ5R3I4 [Medical]
TSGene55020
GENETestsTTC38
Huge Navigator TTC38 [HugePedia]
snp3D : Map Gene to Disease55020
BioCentury BCIQTTC38
ClinGenTTC38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55020
Chemical/Pharm GKB GenePA162407227
Clinical trialTTC38
Miscellaneous
canSAR (ICR)TTC38 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC38
EVEXTTC38
GoPubMedTTC38
iHOPTTC38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:10 CET 2017

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