Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC38 (tetratricopeptide repeat domain 38)

Identity

Alias (NCBI)LL22NC03-5H6.5
HGNC (Hugo) TTC38
HGNC Alias symbFLJ20699
LocusID (NCBI) 55020
Atlas_Id 75290
Location 22q13.31  [Link to chromosome band 22q13]
Location_base_pair Starts at 46268008 and ends at 46294008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRMU (22q13.31) / TTC38 (22q13.31)UNC5A (5q35.2) / TTC38 (22q13.31)TRMU TTC38
UNC5A TTC38

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC38   26082
Cards
Entrez_Gene (NCBI)TTC38    tetratricopeptide repeat domain 38
AliasesLL22NC03-5H6.5
GeneCards (Weizmann)TTC38
Ensembl hg19 (Hinxton)ENSG00000075234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075234 [Gene_View]  ENSG00000075234 [Sequence]  chr22:46268008-46294008 [Contig_View]  TTC38 [Vega]
ICGC DataPortalENSG00000075234
TCGA cBioPortalTTC38
AceView (NCBI)TTC38
Genatlas (Paris)TTC38
SOURCE (Princeton)TTC38
Genetics Home Reference (NIH)TTC38
Genomic and cartography
GoldenPath hg38 (UCSC)TTC38  -     chr22:46268008-46294008 +  22q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC38  -     22q13.31   [Description]    (hg19-Feb_2009)
GoldenPathTTC38 - 22q13.31 [CytoView hg19]  TTC38 - 22q13.31 [CytoView hg38]
ImmunoBaseENSG00000075234
Genome Data Viewer NCBITTC38 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI243497 AK000706 AK127928 AK300606 BC018918
RefSeq transcript (Entrez)NM_017931
Consensus coding sequences : CCDS (NCBI)TTC38
Gene ExpressionTTC38 [ NCBI-GEO ]   TTC38 [ EBI - ARRAY_EXPRESS ]   TTC38 [ SEEK ]   TTC38 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC38 [ Firebrowse - Broad ]
GenevisibleExpression of TTC38 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55020
GTEX Portal (Tissue expression)TTC38
Human Protein AtlasENSG00000075234-TTC38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5R3I4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5R3I4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5R3I4
PhosPhoSitePlusQ5R3I4
Domains : Interpro (EBI)TPR-like_helical_dom_sf    TTC38   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC38
SuperfamilyQ5R3I4
AlphaFold pdb e-kbQ5R3I4   
Human Protein Atlas [tissue]ENSG00000075234-TTC38 [tissue]
HPRD07943
Protein Interaction databases
DIP (DOE-UCLA)Q5R3I4
IntAct (EBI)Q5R3I4
BioGRIDTTC38
STRING (EMBL)TTC38
ZODIACTTC38
Ontologies - Pathways
QuickGOQ5R3I4
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkTTC38
Atlas of Cancer Signalling NetworkTTC38
Wikipedia pathwaysTTC38
Orthology - Evolution
OrthoDB55020
GeneTree (enSembl)ENSG00000075234
Phylogenetic Trees/Animal Genes : TreeFamTTC38
Homologs : HomoloGeneTTC38
Homology/Alignments : Family Browser (UCSC)TTC38
Gene fusions - Rearrangements
Fusion : QuiverTTC38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC38
dbVarTTC38
ClinVarTTC38
MonarchTTC38
1000_GenomesTTC38 
Exome Variant ServerTTC38
GNOMAD BrowserENSG00000075234
Varsome BrowserTTC38
ACMGTTC38 variants
VarityQ5R3I4
Genomic Variants (DGV)TTC38 [DGVbeta]
DECIPHERTTC38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC38 
Mutations
ICGC Data PortalTTC38 
TCGA Data PortalTTC38 
Broad Tumor PortalTTC38
OASIS PortalTTC38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC38  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC38
Mutations and Diseases : HGMDTTC38
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC38
DgiDB (Drug Gene Interaction Database)TTC38
DoCM (Curated mutations)TTC38
CIViC (Clinical Interpretations of Variants in Cancer)TTC38
Cancer3DTTC38
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC38
MedgenTTC38
Genetic Testing Registry TTC38
NextProtQ5R3I4 [Medical]
GENETestsTTC38
Target ValidationTTC38
Huge Navigator TTC38 [HugePedia]
ClinGenTTC38
Clinical trials, drugs, therapy
MyCancerGenomeTTC38
Protein Interactions : CTDTTC38
Pharm GKB GenePA162407227
PharosQ5R3I4
Clinical trialTTC38
Miscellaneous
canSAR (ICR)TTC38
HarmonizomeTTC38
DataMed IndexTTC38
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:19 CEST 2021

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