Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC39A (tetratricopeptide repeat domain 39A)

Identity

Alias (NCBI)C1orf34
DEME-6
HGNC (Hugo) TTC39A
HGNC Alias symbKIAA0452
DEME-6
HGNC Previous nameC1orf34
HGNC Previous namechromosome 1 open reading frame 34
LocusID (NCBI) 22996
Atlas_Id 75291
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 51287258 and ends at 51297961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SERINC5 (5q14.1) / TTC39A (1p32.3)TTC39A (1p32.3) / CRISP1 (6p12.3)TTC39A (1p32.3) / PHGDH (1p12)
TTC39A CRISP1TTC39A PHGDH

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TTC39A   18657
Cards
Entrez_Gene (NCBI)TTC39A    tetratricopeptide repeat domain 39A
AliasesC1orf34; DEME-6
GeneCards (Weizmann)TTC39A
Ensembl hg19 (Hinxton)ENSG00000085831 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085831 [Gene_View]  ENSG00000085831 [Sequence]  chr1:51287258-51297961 [Contig_View]  TTC39A [Vega]
ICGC DataPortalENSG00000085831
TCGA cBioPortalTTC39A
AceView (NCBI)TTC39A
Genatlas (Paris)TTC39A
SOURCE (Princeton)TTC39A
Genetics Home Reference (NIH)TTC39A
Genomic and cartography
GoldenPath hg38 (UCSC)TTC39A  -     chr1:51287258-51297961 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC39A  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC39A - 1p32.3 [CytoView hg19]  TTC39A - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000085831
Genome Data Viewer NCBITTC39A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB007921 AF007170 AK000220 AK298019 AK301587
RefSeq transcript (Entrez)NM_001080494 NM_001144832 NM_001297662 NM_001297663 NM_001297664 NM_001297665 NM_001297666 NM_001297667
Consensus coding sequences : CCDS (NCBI)TTC39A
Gene ExpressionTTC39A [ NCBI-GEO ]   TTC39A [ EBI - ARRAY_EXPRESS ]   TTC39A [ SEEK ]   TTC39A [ MEM ]
Gene Expression Viewer (FireBrowse)TTC39A [ Firebrowse - Broad ]
GenevisibleExpression of TTC39A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22996
GTEX Portal (Tissue expression)TTC39A
Human Protein AtlasENSG00000085831-TTC39A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC39A
Human Protein Atlas [tissue]ENSG00000085831-TTC39A [tissue]
Protein Interaction databases
BioGRIDTTC39A
STRING (EMBL)TTC39A
ZODIACTTC39A
Ontologies - Pathways
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC39A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:19 CEST 2021

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