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TTC39B (tetratricopeptide repeat domain 39B)

Identity

Alias_namesC9orf52
chromosome 9 open reading frame 52
Alias_symbol (synonym)FLJ33868
Other alias
HGNC (Hugo) TTC39B
LocusID (NCBI) 158219
Atlas_Id 75293
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 15170844 and ends at 15307360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGD4 (12p11.21) / TTC39B (9p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC39B   23704
Cards
Entrez_Gene (NCBI)TTC39B  158219  tetratricopeptide repeat domain 39B
AliasesC9orf52
GeneCards (Weizmann)TTC39B
Ensembl hg19 (Hinxton)ENSG00000155158 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155158 [Gene_View]  chr9:15170844-15307360 [Contig_View]  TTC39B [Vega]
ICGC DataPortalENSG00000155158
TCGA cBioPortalTTC39B
AceView (NCBI)TTC39B
Genatlas (Paris)TTC39B
WikiGenes158219
SOURCE (Princeton)TTC39B
Genetics Home Reference (NIH)TTC39B
Genomic and cartography
GoldenPath hg38 (UCSC)TTC39B  -     chr9:15170844-15307360 -  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC39B  -     9p22.3   [Description]    (hg19-Feb_2009)
EnsemblTTC39B - 9p22.3 [CytoView hg19]  TTC39B - 9p22.3 [CytoView hg38]
Mapping of homologs : NCBITTC39B [Mapview hg19]  TTC39B [Mapview hg38]
OMIM613574   
Gene and transcription
Genbank (Entrez)AI473911 AK091187 AK093459 AK298581 AK298998
RefSeq transcript (Entrez)NM_001168339 NM_001168340 NM_001168341 NM_001168342 NM_152574
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC39B
Cluster EST : UnigeneHs.563630 [ NCBI ]
CGAP (NCI)Hs.563630
Alternative Splicing GalleryENSG00000155158
Gene ExpressionTTC39B [ NCBI-GEO ]   TTC39B [ EBI - ARRAY_EXPRESS ]   TTC39B [ SEEK ]   TTC39B [ MEM ]
Gene Expression Viewer (FireBrowse)TTC39B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158219
GTEX Portal (Tissue expression)TTC39B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTQ0
Splice isoforms : SwissVarQ5VTQ0
PhosPhoSitePlusQ5VTQ0
Domains : Interpro (EBI)OMP_Iml2/TPR_39    TPR-like_helical_dom    TPR_repeat    TTC39B   
Domain families : Pfam (Sanger)DUF3808 (PF10300)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam10300    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC39B
DMDM Disease mutations158219
Blocks (Seattle)TTC39B
SuperfamilyQ5VTQ0
Human Protein AtlasENSG00000155158
Peptide AtlasQ5VTQ0
HPRD10801
IPIIPI00954818   IPI01014103   IPI00383549   IPI00954977   IPI00412930   IPI00874006   IPI00967426   IPI00954912   IPI00964962   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTQ0
IntAct (EBI)Q5VTQ0
FunCoupENSG00000155158
BioGRIDTTC39B
STRING (EMBL)TTC39B
ZODIACTTC39B
Ontologies - Pathways
QuickGOQ5VTQ0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC39B
Atlas of Cancer Signalling NetworkTTC39B
Wikipedia pathwaysTTC39B
Orthology - Evolution
OrthoDB158219
GeneTree (enSembl)ENSG00000155158
Phylogenetic Trees/Animal Genes : TreeFamTTC39B
HOVERGENQ5VTQ0
HOGENOMQ5VTQ0
Homologs : HomoloGeneTTC39B
Homology/Alignments : Family Browser (UCSC)TTC39B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC39B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC39B
dbVarTTC39B
ClinVarTTC39B
1000_GenomesTTC39B 
Exome Variant ServerTTC39B
ExAC (Exome Aggregation Consortium)TTC39B (select the gene name)
Genetic variants : HAPMAP158219
Genomic Variants (DGV)TTC39B [DGVbeta]
DECIPHERTTC39B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC39B 
Mutations
ICGC Data PortalTTC39B 
TCGA Data PortalTTC39B 
Broad Tumor PortalTTC39B
OASIS PortalTTC39B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC39B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC39B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC39B
DgiDB (Drug Gene Interaction Database)TTC39B
DoCM (Curated mutations)TTC39B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC39B (select a term)
intoGenTTC39B
Cancer3DTTC39B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613574   
Orphanet
MedgenTTC39B
Genetic Testing Registry TTC39B
NextProtQ5VTQ0 [Medical]
TSGene158219
GENETestsTTC39B
Target ValidationTTC39B
Huge Navigator TTC39B [HugePedia]
snp3D : Map Gene to Disease158219
BioCentury BCIQTTC39B
ClinGenTTC39B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158219
Chemical/Pharm GKB GenePA162407261
Clinical trialTTC39B
Miscellaneous
canSAR (ICR)TTC39B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC39B
EVEXTTC39B
GoPubMedTTC39B
iHOPTTC39B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:33 CEST 2017

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