TTC39C (tetratricopeptide repeat domain 39C)

2014-11-01  

Identity

HGNC
TTC39C
LOCATION
18q11.2
LOCUSID
125488
ALIAS
C18orf17,HsT2697
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 125488
HGNC: 26595
Ensembl: ENSG00000168234

Variants:

dbSNP: 125488
ClinVar: 125488
TCGA: ENSG00000168234
COSMIC: TTC39C

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000168234ENST00000304621Q8N584
ENSG00000168234ENST00000317571Q8N584
ENSG00000168234ENST00000540918G3V1P2
ENSG00000168234ENST00000577185J3QLL8
ENSG00000168234ENST00000579214J3QKX7
ENSG00000168234ENST00000584250Q8N584

Expression (GTEx)

0
5
10
15
20
25
30
35
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
312649242019A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.0

Citation

Dessen P

TTC39C (tetratricopeptide repeat domain 39C)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/75294/ttc39c