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TTC39C (tetratricopeptide repeat domain 39C)

Identity

Alias_namesC18orf17
chromosome 18 open reading frame 17
Alias_symbol (synonym)FLJ33761
HsT2697
Other alias
HGNC (Hugo) TTC39C
LocusID (NCBI) 125488
Atlas_Id 75294
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 24014420 and ends at 24135610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NDC80 (18p11.32) / TTC39C (18q11.2)PSMD2 (3q27.1) / TTC39C (18q11.2)TTC39C (18q11.2) / CABLES1 (18q11.2)
TTC39C (18q11.2) / LAMA3 (18q11.2)TTC39C (18q11.2) / TNRC6B (22q13.1)TTC39C LAMA3
TTC39C CABLES1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC39C   26595
Cards
Entrez_Gene (NCBI)TTC39C  125488  tetratricopeptide repeat domain 39C
AliasesC18orf17; HsT2697
GeneCards (Weizmann)TTC39C
Ensembl hg19 (Hinxton)ENSG00000168234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168234 [Gene_View]  chr18:24014420-24135610 [Contig_View]  TTC39C [Vega]
ICGC DataPortalENSG00000168234
TCGA cBioPortalTTC39C
AceView (NCBI)TTC39C
Genatlas (Paris)TTC39C
WikiGenes125488
SOURCE (Princeton)TTC39C
Genetics Home Reference (NIH)TTC39C
Genomic and cartography
GoldenPath hg38 (UCSC)TTC39C  -     chr18:24014420-24135610 +  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC39C  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblTTC39C - 18q11.2 [CytoView hg19]  TTC39C - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBITTC39C [Mapview hg19]  TTC39C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074875 AK091080 AK296442 AW003831 BC016833
RefSeq transcript (Entrez)NM_001135993 NM_001243425 NM_001292030 NM_153211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC39C
Cluster EST : UnigeneHs.732771 [ NCBI ]
CGAP (NCI)Hs.732771
Alternative Splicing GalleryENSG00000168234
Gene ExpressionTTC39C [ NCBI-GEO ]   TTC39C [ EBI - ARRAY_EXPRESS ]   TTC39C [ SEEK ]   TTC39C [ MEM ]
Gene Expression Viewer (FireBrowse)TTC39C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125488
GTEX Portal (Tissue expression)TTC39C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N584   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N584  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N584
Splice isoforms : SwissVarQ8N584
PhosPhoSitePlusQ8N584
Domains : Interpro (EBI)OMP_Iml2/TPR_39    TPR-like_helical_dom   
Domain families : Pfam (Sanger)DUF3808 (PF10300)   
Domain families : Pfam (NCBI)pfam10300   
Conserved Domain (NCBI)TTC39C
DMDM Disease mutations125488
Blocks (Seattle)TTC39C
SuperfamilyQ8N584
Human Protein AtlasENSG00000168234
Peptide AtlasQ8N584
HPRD08745
IPIIPI00827930   IPI00181911   IPI00645852   
Protein Interaction databases
DIP (DOE-UCLA)Q8N584
IntAct (EBI)Q8N584
FunCoupENSG00000168234
BioGRIDTTC39C
STRING (EMBL)TTC39C
ZODIACTTC39C
Ontologies - Pathways
QuickGOQ8N584
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC39C
Atlas of Cancer Signalling NetworkTTC39C
Wikipedia pathwaysTTC39C
Orthology - Evolution
OrthoDB125488
GeneTree (enSembl)ENSG00000168234
Phylogenetic Trees/Animal Genes : TreeFamTTC39C
HOVERGENQ8N584
HOGENOMQ8N584
Homologs : HomoloGeneTTC39C
Homology/Alignments : Family Browser (UCSC)TTC39C
Gene fusions - Rearrangements
Fusion: TCGATTC39C LAMA3
Fusion: TCGATTC39C CABLES1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC39C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC39C
dbVarTTC39C
ClinVarTTC39C
1000_GenomesTTC39C 
Exome Variant ServerTTC39C
ExAC (Exome Aggregation Consortium)TTC39C (select the gene name)
Genetic variants : HAPMAP125488
Genomic Variants (DGV)TTC39C [DGVbeta]
DECIPHERTTC39C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC39C 
Mutations
ICGC Data PortalTTC39C 
TCGA Data PortalTTC39C 
Broad Tumor PortalTTC39C
OASIS PortalTTC39C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC39C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC39C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC39C
DgiDB (Drug Gene Interaction Database)TTC39C
DoCM (Curated mutations)TTC39C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC39C (select a term)
intoGenTTC39C
Cancer3DTTC39C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC39C
Genetic Testing Registry TTC39C
NextProtQ8N584 [Medical]
TSGene125488
GENETestsTTC39C
Target ValidationTTC39C
Huge Navigator TTC39C [HugePedia]
snp3D : Map Gene to Disease125488
BioCentury BCIQTTC39C
ClinGenTTC39C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125488
Chemical/Pharm GKB GenePA162407262
Clinical trialTTC39C
Miscellaneous
canSAR (ICR)TTC39C (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC39C
EVEXTTC39C
GoPubMedTTC39C
iHOPTTC39C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:34 CEST 2017

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