Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC41P (tetratricopeptide repeat domain 41, pseudogene)

Identity

Alias (NCBI)GNN
GNNP
HGNC (Hugo) TTC41P
HGNC Alias symbGNNP
LocusID (NCBI) 253724
Atlas_Id 63863
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 103843749 and ends at 103930211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC41P   49210
Cards
Entrez_Gene (NCBI)TTC41P    tetratricopeptide repeat domain 41, pseudogene
AliasesGNN; GNNP
GeneCards (Weizmann)TTC41P
Ensembl hg19 (Hinxton)ENSG00000214198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214198 [Gene_View]  ENSG00000214198 [Sequence]  chr12:103843749-103930211 [Contig_View]  TTC41P [Vega]
ICGC DataPortalENSG00000214198
TCGA cBioPortalTTC41P
AceView (NCBI)TTC41P
Genatlas (Paris)TTC41P
SOURCE (Princeton)TTC41P
Genetics Home Reference (NIH)TTC41P
Genomic and cartography
GoldenPath hg38 (UCSC)TTC41P  -     chr12:103843749-103930211 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC41P  -     12q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC41P - 12q23.3 [CytoView hg19]  TTC41P - 12q23.3 [CytoView hg38]
ImmunoBaseENSG00000214198
Genome Data Viewer NCBITTC41P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK299490 BC016335 BC033128 BC064342
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC41P
Gene ExpressionTTC41P [ NCBI-GEO ]   TTC41P [ EBI - ARRAY_EXPRESS ]   TTC41P [ SEEK ]   TTC41P [ MEM ]
Gene Expression Viewer (FireBrowse)TTC41P [ Firebrowse - Broad ]
GenevisibleExpression of TTC41P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253724
GTEX Portal (Tissue expression)TTC41P
Human Protein AtlasENSG00000214198-TTC41P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2S7
PhosPhoSitePlusQ6P2S7
Domains : Interpro (EBI)P-loop_NTPase    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC41P
SuperfamilyQ6P2S7
AlphaFold pdb e-kbQ6P2S7   
Human Protein Atlas [tissue]ENSG00000214198-TTC41P [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6P2S7
IntAct (EBI)Q6P2S7
BioGRIDTTC41P
STRING (EMBL)TTC41P
ZODIACTTC41P
Ontologies - Pathways
QuickGOQ6P2S7
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkTTC41P
Atlas of Cancer Signalling NetworkTTC41P
Wikipedia pathwaysTTC41P
Orthology - Evolution
OrthoDB253724
GeneTree (enSembl)ENSG00000214198
Phylogenetic Trees/Animal Genes : TreeFamTTC41P
Homologs : HomoloGeneTTC41P
Homology/Alignments : Family Browser (UCSC)TTC41P
Gene fusions - Rearrangements
Fusion : QuiverTTC41P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC41P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC41P
dbVarTTC41P
ClinVarTTC41P
MonarchTTC41P
1000_GenomesTTC41P 
Exome Variant ServerTTC41P
GNOMAD BrowserENSG00000214198
Varsome BrowserTTC41P
ACMGTTC41P variants
VarityQ6P2S7
Genomic Variants (DGV)TTC41P [DGVbeta]
DECIPHERTTC41P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC41P 
Mutations
ICGC Data PortalTTC41P 
TCGA Data PortalTTC41P 
Broad Tumor PortalTTC41P
OASIS PortalTTC41P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTC41P
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC41P
DgiDB (Drug Gene Interaction Database)TTC41P
DoCM (Curated mutations)TTC41P
CIViC (Clinical Interpretations of Variants in Cancer)TTC41P
Cancer3DTTC41P
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC41P
MedgenTTC41P
Genetic Testing Registry TTC41P
NextProtQ6P2S7 [Medical]
GENETestsTTC41P
Target ValidationTTC41P
Huge Navigator TTC41P [HugePedia]
ClinGenTTC41P
Clinical trials, drugs, therapy
MyCancerGenomeTTC41P
Protein Interactions : CTDTTC41P
PharosQ6P2S7
Clinical trialTTC41P
Miscellaneous
canSAR (ICR)TTC41P
HarmonizomeTTC41P
DataMed IndexTTC41P
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC41P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:20 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.