Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC41P (tetratricopeptide repeat domain 41, pseudogene)

Identity

Alias_symbol (synonym)GNNP
Other aliasGNN
HGNC (Hugo) TTC41P
LocusID (NCBI) 253724
Atlas_Id 63863
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 103843749 and ends at 103930211 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC41P   49210
Cards
Entrez_Gene (NCBI)TTC41P  253724  tetratricopeptide repeat domain 41, pseudogene
AliasesGNN; GNNP
GeneCards (Weizmann)TTC41P
Ensembl hg19 (Hinxton)ENSG00000214198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214198 [Gene_View]  chr12:103843749-103930211 [Contig_View]  TTC41P [Vega]
ICGC DataPortalENSG00000214198
TCGA cBioPortalTTC41P
AceView (NCBI)TTC41P
Genatlas (Paris)TTC41P
WikiGenes253724
SOURCE (Princeton)TTC41P
Genetics Home Reference (NIH)TTC41P
Genomic and cartography
GoldenPath hg38 (UCSC)TTC41P  -     chr12:103843749-103930211 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC41P  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblTTC41P - 12q23.3 [CytoView hg19]  TTC41P - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBITTC41P [Mapview hg19]  TTC41P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK299490 BC016335 BC033128 BC064342
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC41P
Cluster EST : UnigeneHs.506549 [ NCBI ]
CGAP (NCI)Hs.506549
Alternative Splicing GalleryENSG00000214198
Gene ExpressionTTC41P [ NCBI-GEO ]   TTC41P [ EBI - ARRAY_EXPRESS ]   TTC41P [ SEEK ]   TTC41P [ MEM ]
Gene Expression Viewer (FireBrowse)TTC41P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253724
GTEX Portal (Tissue expression)TTC41P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2S7
Splice isoforms : SwissVarQ6P2S7
PhosPhoSitePlusQ6P2S7
Domains : Interpro (EBI)DUF4062    P-loop_NTPase    TPR-like_helical_dom   
Domain families : Pfam (Sanger)DUF4062 (PF13271)   
Domain families : Pfam (NCBI)pfam13271   
Conserved Domain (NCBI)TTC41P
DMDM Disease mutations253724
Blocks (Seattle)TTC41P
SuperfamilyQ6P2S7
Human Protein AtlasENSG00000214198
Peptide AtlasQ6P2S7
IPIIPI00896403   IPI00896378   IPI00760661   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2S7
IntAct (EBI)Q6P2S7
FunCoupENSG00000214198
BioGRIDTTC41P
STRING (EMBL)TTC41P
ZODIACTTC41P
Ontologies - Pathways
QuickGOQ6P2S7
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkTTC41P
Atlas of Cancer Signalling NetworkTTC41P
Wikipedia pathwaysTTC41P
Orthology - Evolution
OrthoDB253724
GeneTree (enSembl)ENSG00000214198
Phylogenetic Trees/Animal Genes : TreeFamTTC41P
HOVERGENQ6P2S7
HOGENOMQ6P2S7
Homologs : HomoloGeneTTC41P
Homology/Alignments : Family Browser (UCSC)TTC41P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC41P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC41P
dbVarTTC41P
ClinVarTTC41P
1000_GenomesTTC41P 
Exome Variant ServerTTC41P
ExAC (Exome Aggregation Consortium)TTC41P (select the gene name)
Genetic variants : HAPMAP253724
Genomic Variants (DGV)TTC41P [DGVbeta]
DECIPHERTTC41P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC41P 
Mutations
ICGC Data PortalTTC41P 
TCGA Data PortalTTC41P 
Broad Tumor PortalTTC41P
OASIS PortalTTC41P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTC41P
BioMutasearch TTC41P
DgiDB (Drug Gene Interaction Database)TTC41P
DoCM (Curated mutations)TTC41P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC41P (select a term)
intoGenTTC41P
Cancer3DTTC41P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC41P
Genetic Testing Registry TTC41P
NextProtQ6P2S7 [Medical]
TSGene253724
GENETestsTTC41P
Target ValidationTTC41P
Huge Navigator TTC41P [HugePedia]
snp3D : Map Gene to Disease253724
BioCentury BCIQTTC41P
ClinGenTTC41P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253724
Clinical trialTTC41P
Miscellaneous
canSAR (ICR)TTC41P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC41P
EVEXTTC41P
GoPubMedTTC41P
iHOPTTC41P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:51 CEST 2017

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