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TTC5 (tetratricopeptide repeat domain 5)

Identity

Alias_symbol (synonym)Strap
Other alias
HGNC (Hugo) TTC5
LocusID (NCBI) 91875
Atlas_Id 50198
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20289141 and ends at 20305994 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC5   19274
Cards
Entrez_Gene (NCBI)TTC5  91875  tetratricopeptide repeat domain 5
AliasesStrap
GeneCards (Weizmann)TTC5
Ensembl hg19 (Hinxton)ENSG00000136319 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136319 [Gene_View]  chr14:20289141-20305994 [Contig_View]  TTC5 [Vega]
ICGC DataPortalENSG00000136319
TCGA cBioPortalTTC5
AceView (NCBI)TTC5
Genatlas (Paris)TTC5
WikiGenes91875
SOURCE (Princeton)TTC5
Genetics Home Reference (NIH)TTC5
Genomic and cartography
GoldenPath hg38 (UCSC)TTC5  -     chr14:20289141-20305994 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC5  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblTTC5 - 14q11.2 [CytoView hg19]  TTC5 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBITTC5 [Mapview hg19]  TTC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074553 BC008647 BC030822 BC053538 BM998414
RefSeq transcript (Entrez)NM_138376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC5
Cluster EST : UnigeneHs.98553 [ NCBI ]
CGAP (NCI)Hs.98553
Alternative Splicing GalleryENSG00000136319
Gene ExpressionTTC5 [ NCBI-GEO ]   TTC5 [ EBI - ARRAY_EXPRESS ]   TTC5 [ SEEK ]   TTC5 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91875
GTEX Portal (Tissue expression)TTC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Z6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Z6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Z6
Splice isoforms : SwissVarQ8N0Z6
PhosPhoSitePlusQ8N0Z6
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    TTC5_OB   
Domain families : Pfam (Sanger)TTC5_OB (PF16669)   
Domain families : Pfam (NCBI)pfam16669   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC5
DMDM Disease mutations91875
Blocks (Seattle)TTC5
PDB (SRS)2XVS   
PDB (PDBSum)2XVS   
PDB (IMB)2XVS   
PDB (RSDB)2XVS   
Structural Biology KnowledgeBase2XVS   
SCOP (Structural Classification of Proteins)2XVS   
CATH (Classification of proteins structures)2XVS   
SuperfamilyQ8N0Z6
Human Protein AtlasENSG00000136319
Peptide AtlasQ8N0Z6
HPRD15584
IPIIPI00166123   IPI00423375   IPI01026106   IPI00383972   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Z6
IntAct (EBI)Q8N0Z6
FunCoupENSG00000136319
BioGRIDTTC5
STRING (EMBL)TTC5
ZODIACTTC5
Ontologies - Pathways
QuickGOQ8N0Z6
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  DNA repair  positive regulation of transcription from RNA polymerase II promoter  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  DNA repair  positive regulation of transcription from RNA polymerase II promoter  regulation of signal transduction by p53 class mediator  
NDEx NetworkTTC5
Atlas of Cancer Signalling NetworkTTC5
Wikipedia pathwaysTTC5
Orthology - Evolution
OrthoDB91875
GeneTree (enSembl)ENSG00000136319
Phylogenetic Trees/Animal Genes : TreeFamTTC5
HOVERGENQ8N0Z6
HOGENOMQ8N0Z6
Homologs : HomoloGeneTTC5
Homology/Alignments : Family Browser (UCSC)TTC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC5
dbVarTTC5
ClinVarTTC5
1000_GenomesTTC5 
Exome Variant ServerTTC5
ExAC (Exome Aggregation Consortium)TTC5 (select the gene name)
Genetic variants : HAPMAP91875
Genomic Variants (DGV)TTC5 [DGVbeta]
DECIPHERTTC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC5 
Mutations
ICGC Data PortalTTC5 
TCGA Data PortalTTC5 
Broad Tumor PortalTTC5
OASIS PortalTTC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC5
DgiDB (Drug Gene Interaction Database)TTC5
DoCM (Curated mutations)TTC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC5 (select a term)
intoGenTTC5
Cancer3DTTC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC5
Genetic Testing Registry TTC5
NextProtQ8N0Z6 [Medical]
TSGene91875
GENETestsTTC5
Target ValidationTTC5
Huge Navigator TTC5 [HugePedia]
snp3D : Map Gene to Disease91875
BioCentury BCIQTTC5
ClinGenTTC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91875
Chemical/Pharm GKB GenePA134919164
Clinical trialTTC5
Miscellaneous
canSAR (ICR)TTC5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC5
EVEXTTC5
GoPubMedTTC5
iHOPTTC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:14 CEST 2017

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