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TTC6 (tetratricopeptide repeat domain 6)

Identity

Alias_namesNCRNA00291
C14orf25
non-protein coding RNA 291
chromosome 14 open reading frame 25
Other alias
HGNC (Hugo) TTC6
LocusID (NCBI) 319089
Atlas_Id 75298
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 37595199 and ends at 37842625 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TTC6 (14q21.1) / ACTN4 (19q13.2)TTC6 (14q21.1) / ERCC6L2 (9q22.32)TTC6 (14q21.1) / FAM177A1 (14q13.2)
TTC6 (14q21.1) / KIAA0391 (14q13.2)TTC6 (14q21.1) / MIPOL1 (14q13.3)TTC6 MIPOL1
TTC6 ACTN4TTC6 KIAA0391TTC6 FAM177A1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC6   19739
Cards
Entrez_Gene (NCBI)TTC6  319089  tetratricopeptide repeat domain 6
AliasesC14orf25; NCRNA00291
GeneCards (Weizmann)TTC6
Ensembl hg19 (Hinxton)ENSG00000139865 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139865 [Gene_View]  chr14:37595199-37842625 [Contig_View]  TTC6 [Vega]
ICGC DataPortalENSG00000139865
TCGA cBioPortalTTC6
AceView (NCBI)TTC6
Genatlas (Paris)TTC6
WikiGenes319089
SOURCE (Princeton)TTC6
Genetics Home Reference (NIH)TTC6
Genomic and cartography
GoldenPath hg38 (UCSC)TTC6  -     chr14:37595199-37842625 +  14q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC6  -     14q21.1   [Description]    (hg19-Feb_2009)
EnsemblTTC6 - 14q21.1 [CytoView hg19]  TTC6 - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBITTC6 [Mapview hg19]  TTC6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014342 BC038110 BC103914 BC103915 BC103916
RefSeq transcript (Entrez)NM_001007795 NM_001310135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC6
Cluster EST : UnigeneHs.659936 [ NCBI ]
CGAP (NCI)Hs.659936
Alternative Splicing GalleryENSG00000139865
Gene ExpressionTTC6 [ NCBI-GEO ]   TTC6 [ EBI - ARRAY_EXPRESS ]   TTC6 [ SEEK ]   TTC6 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)319089
GTEX Portal (Tissue expression)TTC6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TZ1
Splice isoforms : SwissVarQ86TZ1
PhosPhoSitePlusQ86TZ1
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC6
DMDM Disease mutations319089
Blocks (Seattle)TTC6
SuperfamilyQ86TZ1
Human Protein AtlasENSG00000139865
Peptide AtlasQ86TZ1
IPIIPI00935528   IPI00651775   IPI01026418   IPI01026039   IPI01025872   IPI00977481   IPI00983166   
Protein Interaction databases
DIP (DOE-UCLA)Q86TZ1
IntAct (EBI)Q86TZ1
FunCoupENSG00000139865
BioGRIDTTC6
STRING (EMBL)TTC6
ZODIACTTC6
Ontologies - Pathways
QuickGOQ86TZ1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC6
Atlas of Cancer Signalling NetworkTTC6
Wikipedia pathwaysTTC6
Orthology - Evolution
OrthoDB319089
GeneTree (enSembl)ENSG00000139865
Phylogenetic Trees/Animal Genes : TreeFamTTC6
HOVERGENQ86TZ1
HOGENOMQ86TZ1
Homologs : HomoloGeneTTC6
Homology/Alignments : Family Browser (UCSC)TTC6
Gene fusions - Rearrangements
Fusion: TCGATTC6 MIPOL1
Fusion: TCGATTC6 ACTN4
Fusion: TCGATTC6 KIAA0391
Fusion: TCGATTC6 FAM177A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC6
dbVarTTC6
ClinVarTTC6
1000_GenomesTTC6 
Exome Variant ServerTTC6
ExAC (Exome Aggregation Consortium)TTC6 (select the gene name)
Genetic variants : HAPMAP319089
Genomic Variants (DGV)TTC6 [DGVbeta]
DECIPHERTTC6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC6 
Mutations
ICGC Data PortalTTC6 
TCGA Data PortalTTC6 
Broad Tumor PortalTTC6
OASIS PortalTTC6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC6
DgiDB (Drug Gene Interaction Database)TTC6
DoCM (Curated mutations)TTC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC6 (select a term)
intoGenTTC6
Cancer3DTTC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC6
Genetic Testing Registry TTC6
NextProtQ86TZ1 [Medical]
TSGene319089
GENETestsTTC6
Target ValidationTTC6
Huge Navigator TTC6 [HugePedia]
snp3D : Map Gene to Disease319089
BioCentury BCIQTTC6
ClinGenTTC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD319089
Chemical/Pharm GKB GenePA134868995
Clinical trialTTC6
Miscellaneous
canSAR (ICR)TTC6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC6
EVEXTTC6
GoPubMedTTC6
iHOPTTC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:35 CEST 2017

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