Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC7A (tetratricopeptide repeat domain 7A)

Identity

Alias (NCBI)GIDID
MINAT
TTC7
HGNC (Hugo) TTC7A
HGNC Alias symbKIAA1140
HGNC Previous nameTTC7
HGNC Previous nametetratricopeptide repeat domain 7
LocusID (NCBI) 57217
Atlas_Id 57080
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46941224 and ends at 47076123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSH2 (2p21) / TTC7A (2p21)TTC7A (2p21) / FSHR (2p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC7A   19750
Cards
Entrez_Gene (NCBI)TTC7A    tetratricopeptide repeat domain 7A
AliasesGIDID; MINAT; TTC7
GeneCards (Weizmann)TTC7A
Ensembl hg19 (Hinxton)ENSG00000068724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068724 [Gene_View]  ENSG00000068724 [Sequence]  chr2:46941224-47076123 [Contig_View]  TTC7A [Vega]
ICGC DataPortalENSG00000068724
TCGA cBioPortalTTC7A
AceView (NCBI)TTC7A
Genatlas (Paris)TTC7A
SOURCE (Princeton)TTC7A
Genetics Home Reference (NIH)TTC7A
Genomic and cartography
GoldenPath hg38 (UCSC)TTC7A  -     chr2:46941224-47076123 +  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC7A  -     2p21   [Description]    (hg19-Feb_2009)
GoldenPathTTC7A - 2p21 [CytoView hg19]  TTC7A - 2p21 [CytoView hg38]
ImmunoBaseENSG00000068724
Genome Data Viewer NCBITTC7A [Mapview hg19]  
OMIM243150   609332   
Gene and transcription
Genbank (Entrez)AA504156 AB032966 AI694289 AK056464 AL117512
RefSeq transcript (Entrez)NM_001288951 NM_001288953 NM_001288955 NM_020458
Consensus coding sequences : CCDS (NCBI)TTC7A
Gene ExpressionTTC7A [ NCBI-GEO ]   TTC7A [ EBI - ARRAY_EXPRESS ]   TTC7A [ SEEK ]   TTC7A [ MEM ]
Gene Expression Viewer (FireBrowse)TTC7A [ Firebrowse - Broad ]
GenevisibleExpression of TTC7A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57217
GTEX Portal (Tissue expression)TTC7A
Human Protein AtlasENSG00000068724-TTC7A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULT0
PhosPhoSitePlusQ9ULT0
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat    Ttc7A   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC7A
SuperfamilyQ9ULT0
AlphaFold pdb e-kbQ9ULT0   
Human Protein Atlas [tissue]ENSG00000068724-TTC7A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9ULT0
IntAct (EBI)Q9ULT0
BioGRIDTTC7A
STRING (EMBL)TTC7A
ZODIACTTC7A
Ontologies - Pathways
QuickGOQ9ULT0
Ontology : AmiGOcytoplasm  plasma membrane  cellular iron ion homeostasis  hemopoiesis  phosphatidylinositol phosphate biosynthetic process  protein localization to plasma membrane  protein localization to plasma membrane  
Ontology : EGO-EBIcytoplasm  plasma membrane  cellular iron ion homeostasis  hemopoiesis  phosphatidylinositol phosphate biosynthetic process  protein localization to plasma membrane  protein localization to plasma membrane  
NDEx NetworkTTC7A
Atlas of Cancer Signalling NetworkTTC7A
Wikipedia pathwaysTTC7A
Orthology - Evolution
OrthoDB57217
GeneTree (enSembl)ENSG00000068724
Phylogenetic Trees/Animal Genes : TreeFamTTC7A
Homologs : HomoloGeneTTC7A
Homology/Alignments : Family Browser (UCSC)TTC7A
Gene fusions - Rearrangements
Fusion : QuiverTTC7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC7A
dbVarTTC7A
ClinVarTTC7A
MonarchTTC7A
1000_GenomesTTC7A 
Exome Variant ServerTTC7A
GNOMAD BrowserENSG00000068724
Varsome BrowserTTC7A
ACMGTTC7A variants
VarityQ9ULT0
Genomic Variants (DGV)TTC7A [DGVbeta]
DECIPHERTTC7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC7A 
Mutations
ICGC Data PortalTTC7A 
TCGA Data PortalTTC7A 
Broad Tumor PortalTTC7A
OASIS PortalTTC7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC7A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC7A
Mutations and Diseases : HGMDTTC7A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC7A
DgiDB (Drug Gene Interaction Database)TTC7A
DoCM (Curated mutations)TTC7A
CIViC (Clinical Interpretations of Variants in Cancer)TTC7A
Cancer3DTTC7A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM243150    609332   
Orphanet
DisGeNETTTC7A
MedgenTTC7A
Genetic Testing Registry TTC7A
NextProtQ9ULT0 [Medical]
GENETestsTTC7A
Target ValidationTTC7A
Huge Navigator TTC7A [HugePedia]
ClinGenTTC7A
Clinical trials, drugs, therapy
MyCancerGenomeTTC7A
Protein Interactions : CTDTTC7A
Pharm GKB GenePA134993362
PharosQ9ULT0
Clinical trialTTC7A
Miscellaneous
canSAR (ICR)TTC7A
HarmonizomeTTC7A
DataMed IndexTTC7A
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:44 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.