Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC7A (tetratricopeptide repeat domain 7A)

Identity

Alias_namesTTC7
tetratricopeptide repeat domain 7
Alias_symbol (synonym)KIAA1140
Other aliasGIDID
MINAT
HGNC (Hugo) TTC7A
LocusID (NCBI) 57217
Atlas_Id 75299
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46941174 and ends at 47076136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSH2 (2p21) / TTC7A (2p21)TTC7A (2p21) / FSHR (2p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC7A   19750
Cards
Entrez_Gene (NCBI)TTC7A  57217  tetratricopeptide repeat domain 7A
AliasesGIDID; MINAT; TTC7
GeneCards (Weizmann)TTC7A
Ensembl hg19 (Hinxton)ENSG00000068724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068724 [Gene_View]  chr2:46941174-47076136 [Contig_View]  TTC7A [Vega]
ICGC DataPortalENSG00000068724
TCGA cBioPortalTTC7A
AceView (NCBI)TTC7A
Genatlas (Paris)TTC7A
WikiGenes57217
SOURCE (Princeton)TTC7A
Genetics Home Reference (NIH)TTC7A
Genomic and cartography
GoldenPath hg38 (UCSC)TTC7A  -     chr2:46941174-47076136 +  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC7A  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblTTC7A - 2p21 [CytoView hg19]  TTC7A - 2p21 [CytoView hg38]
Mapping of homologs : NCBITTC7A [Mapview hg19]  TTC7A [Mapview hg38]
OMIM243150   609332   
Gene and transcription
Genbank (Entrez)AA504156 AB032966 AI694289 AK056464 AL117512
RefSeq transcript (Entrez)NM_001288951 NM_001288953 NM_001288955 NM_020458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC7A
Cluster EST : UnigeneHs.738494 [ NCBI ]
CGAP (NCI)Hs.738494
Alternative Splicing GalleryENSG00000068724
Gene ExpressionTTC7A [ NCBI-GEO ]   TTC7A [ EBI - ARRAY_EXPRESS ]   TTC7A [ SEEK ]   TTC7A [ MEM ]
Gene Expression Viewer (FireBrowse)TTC7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57217
GTEX Portal (Tissue expression)TTC7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULT0
Splice isoforms : SwissVarQ9ULT0
PhosPhoSitePlusQ9ULT0
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat    Ttc7A   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC7A
DMDM Disease mutations57217
Blocks (Seattle)TTC7A
SuperfamilyQ9ULT0
Human Protein AtlasENSG00000068724
Peptide AtlasQ9ULT0
HPRD18239
IPIIPI00397195   IPI00966765   IPI00186771   IPI01014482   IPI00718992   IPI00916858   IPI00916403   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULT0
IntAct (EBI)Q9ULT0
FunCoupENSG00000068724
BioGRIDTTC7A
STRING (EMBL)TTC7A
ZODIACTTC7A
Ontologies - Pathways
QuickGOQ9ULT0
Ontology : AmiGOcytoplasm  plasma membrane  cellular iron ion homeostasis  hemopoiesis  establishment of protein localization to plasma membrane  
Ontology : EGO-EBIcytoplasm  plasma membrane  cellular iron ion homeostasis  hemopoiesis  establishment of protein localization to plasma membrane  
NDEx NetworkTTC7A
Atlas of Cancer Signalling NetworkTTC7A
Wikipedia pathwaysTTC7A
Orthology - Evolution
OrthoDB57217
GeneTree (enSembl)ENSG00000068724
Phylogenetic Trees/Animal Genes : TreeFamTTC7A
HOVERGENQ9ULT0
HOGENOMQ9ULT0
Homologs : HomoloGeneTTC7A
Homology/Alignments : Family Browser (UCSC)TTC7A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC7A
dbVarTTC7A
ClinVarTTC7A
1000_GenomesTTC7A 
Exome Variant ServerTTC7A
ExAC (Exome Aggregation Consortium)TTC7A (select the gene name)
Genetic variants : HAPMAP57217
Genomic Variants (DGV)TTC7A [DGVbeta]
DECIPHERTTC7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC7A 
Mutations
ICGC Data PortalTTC7A 
TCGA Data PortalTTC7A 
Broad Tumor PortalTTC7A
OASIS PortalTTC7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch TTC7A
DgiDB (Drug Gene Interaction Database)TTC7A
DoCM (Curated mutations)TTC7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC7A (select a term)
intoGenTTC7A
Cancer3DTTC7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM243150    609332   
Orphanet515    23336   
MedgenTTC7A
Genetic Testing Registry TTC7A
NextProtQ9ULT0 [Medical]
TSGene57217
GENETestsTTC7A
Target ValidationTTC7A
Huge Navigator TTC7A [HugePedia]
snp3D : Map Gene to Disease57217
BioCentury BCIQTTC7A
ClinGenTTC7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57217
Chemical/Pharm GKB GenePA134993362
Clinical trialTTC7A
Miscellaneous
canSAR (ICR)TTC7A (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC7A
EVEXTTC7A
GoPubMedTTC7A
iHOPTTC7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.