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TTC7B (tetratricopeptide repeat domain 7B)

Identity

Alias_namesTTC7L1
tetratricopeptide repeat domain 7 like 1
Other aliasc14_5685
HGNC (Hugo) TTC7B
LocusID (NCBI) 145567
Atlas_Id 75300
Location 14q32.11  [Link to chromosome band 14q32]
Location_base_pair Starts at 90540588 and ends at 90816417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDAH2 (6p21.33) / TTC7B (14q32.11)TTC7B (14q32.11) / NT5E (6q14.3)TTC7B (14q32.11) / PPP2R5C (14q32.31)
TTC7B (14q32.11) / RPS6KA5 (14q32.11)TTC7B (14q32.11) / TTC7B (14q32.11)TTC7B RPS6KA5
TTC7B PPP2R5C

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC7B   19858
Cards
Entrez_Gene (NCBI)TTC7B  145567  tetratricopeptide repeat domain 7B
AliasesTTC7L1; c14_5685
GeneCards (Weizmann)TTC7B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:90540588-90816417 [Contig_View]  TTC7B [Vega]
TCGA cBioPortalTTC7B
AceView (NCBI)TTC7B
Genatlas (Paris)TTC7B
WikiGenes145567
SOURCE (Princeton)TTC7B
Genetics Home Reference (NIH)TTC7B
Genomic and cartography
GoldenPath hg38 (UCSC)TTC7B  -     chr14:90540588-90816417 -  14q32.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC7B  -     14q32.11   [Description]    (hg19-Feb_2009)
EnsemblTTC7B - 14q32.11 [CytoView hg19]  TTC7B - 14q32.11 [CytoView hg38]
Mapping of homologs : NCBITTC7B [Mapview hg19]  TTC7B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126571 AL832848 AW081996 BC035865 BC048270
RefSeq transcript (Entrez)NM_001010854 NM_001320421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC7B
Cluster EST : UnigeneHs.655697 [ NCBI ]
CGAP (NCI)Hs.655697
Gene ExpressionTTC7B [ NCBI-GEO ]   TTC7B [ EBI - ARRAY_EXPRESS ]   TTC7B [ SEEK ]   TTC7B [ MEM ]
Gene Expression Viewer (FireBrowse)TTC7B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145567
GTEX Portal (Tissue expression)TTC7B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TV6
Splice isoforms : SwissVarQ86TV6
PhosPhoSitePlusQ86TV6
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC7B
DMDM Disease mutations145567
Blocks (Seattle)TTC7B
PDB (SRS)5DSE   
PDB (PDBSum)5DSE   
PDB (IMB)5DSE   
PDB (RSDB)5DSE   
Structural Biology KnowledgeBase5DSE   
SCOP (Structural Classification of Proteins)5DSE   
CATH (Classification of proteins structures)5DSE   
SuperfamilyQ86TV6
Peptide AtlasQ86TV6
HPRD18503
IPIIPI00337641   IPI00456534   IPI00982784   IPI01026136   IPI01026254   IPI01025941   IPI01025868   IPI01024723   IPI01024929   IPI01026376   IPI01026490   IPI01025149   
Protein Interaction databases
DIP (DOE-UCLA)Q86TV6
IntAct (EBI)Q86TV6
BioGRIDTTC7B
STRING (EMBL)TTC7B
ZODIACTTC7B
Ontologies - Pathways
QuickGOQ86TV6
Ontology : AmiGOprotein binding  cytosol  plasma membrane  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
NDEx NetworkTTC7B
Atlas of Cancer Signalling NetworkTTC7B
Wikipedia pathwaysTTC7B
Orthology - Evolution
OrthoDB145567
Phylogenetic Trees/Animal Genes : TreeFamTTC7B
HOVERGENQ86TV6
HOGENOMQ86TV6
Homologs : HomoloGeneTTC7B
Homology/Alignments : Family Browser (UCSC)TTC7B
Gene fusions - Rearrangements
Fusion: TCGATTC7B RPS6KA5
Fusion: TCGATTC7B PPP2R5C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC7B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC7B
dbVarTTC7B
ClinVarTTC7B
1000_GenomesTTC7B 
Exome Variant ServerTTC7B
ExAC (Exome Aggregation Consortium)TTC7B (select the gene name)
Genetic variants : HAPMAP145567
Genomic Variants (DGV)TTC7B [DGVbeta]
DECIPHERTTC7B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC7B 
Mutations
ICGC Data PortalTTC7B 
TCGA Data PortalTTC7B 
Broad Tumor PortalTTC7B
OASIS PortalTTC7B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC7B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC7B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC7B
DgiDB (Drug Gene Interaction Database)TTC7B
DoCM (Curated mutations)TTC7B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC7B (select a term)
intoGenTTC7B
Cancer3DTTC7B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC7B
Genetic Testing Registry TTC7B
NextProtQ86TV6 [Medical]
TSGene145567
GENETestsTTC7B
Target ValidationTTC7B
Huge Navigator TTC7B [HugePedia]
snp3D : Map Gene to Disease145567
BioCentury BCIQTTC7B
ClinGenTTC7B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145567
Chemical/Pharm GKB GenePA134947112
Clinical trialTTC7B
Miscellaneous
canSAR (ICR)TTC7B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC7B
EVEXTTC7B
GoPubMedTTC7B
iHOPTTC7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:35 CEST 2017

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