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TTC8 (tetratricopeptide repeat domain 8)

Identity

Alias_symbol (synonym)BBS8
RP51
Other alias
HGNC (Hugo) TTC8
LocusID (NCBI) 123016
Atlas_Id 75301
Location 14q31.3  [Link to chromosome band 14q31]
Location_base_pair Starts at 88824153 and ends at 88877996 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC8   20087
Cards
Entrez_Gene (NCBI)TTC8  123016  tetratricopeptide repeat domain 8
AliasesBBS8; RP51
GeneCards (Weizmann)TTC8
Ensembl hg19 (Hinxton)ENSG00000165533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165533 [Gene_View]  chr14:88824153-88877996 [Contig_View]  TTC8 [Vega]
ICGC DataPortalENSG00000165533
TCGA cBioPortalTTC8
AceView (NCBI)TTC8
Genatlas (Paris)TTC8
WikiGenes123016
SOURCE (Princeton)TTC8
Genetics Home Reference (NIH)TTC8
Genomic and cartography
GoldenPath hg38 (UCSC)TTC8  -     chr14:88824153-88877996 +  14q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC8  -     14q31.3   [Description]    (hg19-Feb_2009)
EnsemblTTC8 - 14q31.3 [CytoView hg19]  TTC8 - 14q31.3 [CytoView hg38]
Mapping of homologs : NCBITTC8 [Mapview hg19]  TTC8 [Mapview hg38]
OMIM608132   613464   615985   
Gene and transcription
Genbank (Entrez)AF086168 AK093891 AK124675 AK296077 AK315772
RefSeq transcript (Entrez)NM_001288781 NM_001288782 NM_001288783 NM_144596 NM_198309 NM_198310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC8
Cluster EST : UnigeneHs.303055 [ NCBI ]
CGAP (NCI)Hs.303055
Alternative Splicing GalleryENSG00000165533
Gene ExpressionTTC8 [ NCBI-GEO ]   TTC8 [ EBI - ARRAY_EXPRESS ]   TTC8 [ SEEK ]   TTC8 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123016
GTEX Portal (Tissue expression)TTC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAM2
Splice isoforms : SwissVarQ8TAM2
PhosPhoSitePlusQ8TAM2
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_7 (PF13176)   
Domain families : Pfam (NCBI)pfam13176   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC8
DMDM Disease mutations123016
Blocks (Seattle)TTC8
SuperfamilyQ8TAM2
Human Protein AtlasENSG00000165533
Peptide AtlasQ8TAM2
IPIIPI00152075   IPI00333899   IPI00328653   IPI00333901   IPI01018180   IPI01013785   IPI01025353   IPI00910396   IPI01026532   IPI00384135   IPI01024912   IPI01024795   IPI00333903   IPI00970899   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAM2
IntAct (EBI)Q8TAM2
FunCoupENSG00000165533
BioGRIDTTC8
STRING (EMBL)TTC8
ZODIACTTC8
Ontologies - Pathways
QuickGOQ8TAM2
Ontology : AmiGORNA polymerase II repressing transcription factor binding  protein binding  centrosome  cytosol  cilium  protein transport  BBSome  ciliary basal body  establishment of anatomical structure orientation  sensory processing  ciliary membrane  cilium assembly  
Ontology : EGO-EBIRNA polymerase II repressing transcription factor binding  protein binding  centrosome  cytosol  cilium  protein transport  BBSome  ciliary basal body  establishment of anatomical structure orientation  sensory processing  ciliary membrane  cilium assembly  
NDEx NetworkTTC8
Atlas of Cancer Signalling NetworkTTC8
Wikipedia pathwaysTTC8
Orthology - Evolution
OrthoDB123016
GeneTree (enSembl)ENSG00000165533
Phylogenetic Trees/Animal Genes : TreeFamTTC8
HOVERGENQ8TAM2
HOGENOMQ8TAM2
Homologs : HomoloGeneTTC8
Homology/Alignments : Family Browser (UCSC)TTC8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC8
dbVarTTC8
ClinVarTTC8
1000_GenomesTTC8 
Exome Variant ServerTTC8
ExAC (Exome Aggregation Consortium)TTC8 (select the gene name)
Genetic variants : HAPMAP123016
Genomic Variants (DGV)TTC8 [DGVbeta]
DECIPHERTTC8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC8 
Mutations
ICGC Data PortalTTC8 
TCGA Data PortalTTC8 
Broad Tumor PortalTTC8
OASIS PortalTTC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch TTC8
DgiDB (Drug Gene Interaction Database)TTC8
DoCM (Curated mutations)TTC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC8 (select a term)
intoGenTTC8
Cancer3DTTC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608132    613464    615985   
Orphanet659    3244   
MedgenTTC8
Genetic Testing Registry TTC8
NextProtQ8TAM2 [Medical]
TSGene123016
GENETestsTTC8
Target ValidationTTC8
Huge Navigator TTC8 [HugePedia]
snp3D : Map Gene to Disease123016
BioCentury BCIQTTC8
ClinGenTTC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123016
Chemical/Pharm GKB GenePA134877629
Clinical trialTTC8
Miscellaneous
canSAR (ICR)TTC8 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC8
EVEXTTC8
GoPubMedTTC8
iHOPTTC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:35 CEST 2017

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