Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC9 (tetratricopeptide repeat domain 9)

Identity

Alias (NCBI)TTC9A
HGNC (Hugo) TTC9
HGNC Alias symbKIAA0227
TTC9A
LocusID (NCBI) 23508
Atlas_Id 50601
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 70641916 and ends at 70675366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC9   20267
Cards
Entrez_Gene (NCBI)TTC9    tetratricopeptide repeat domain 9
AliasesTTC9A
GeneCards (Weizmann)TTC9
Ensembl hg19 (Hinxton)ENSG00000133985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133985 [Gene_View]  ENSG00000133985 [Sequence]  chr14:70641916-70675366 [Contig_View]  TTC9 [Vega]
ICGC DataPortalENSG00000133985
TCGA cBioPortalTTC9
AceView (NCBI)TTC9
Genatlas (Paris)TTC9
SOURCE (Princeton)TTC9
Genetics Home Reference (NIH)TTC9
Genomic and cartography
GoldenPath hg38 (UCSC)TTC9  -     chr14:70641916-70675366 +  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC9  -     14q24.2   [Description]    (hg19-Feb_2009)
GoldenPathTTC9 - 14q24.2 [CytoView hg19]  TTC9 - 14q24.2 [CytoView hg38]
ImmunoBaseENSG00000133985
Genome Data Viewer NCBITTC9 [Mapview hg19]  
OMIM610488   
Gene and transcription
Genbank (Entrez)BC047950 BX407741 D86980
RefSeq transcript (Entrez)NM_015351
Consensus coding sequences : CCDS (NCBI)TTC9
Gene ExpressionTTC9 [ NCBI-GEO ]   TTC9 [ EBI - ARRAY_EXPRESS ]   TTC9 [ SEEK ]   TTC9 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC9 [ Firebrowse - Broad ]
GenevisibleExpression of TTC9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23508
GTEX Portal (Tissue expression)TTC9
Human Protein AtlasENSG00000133985-TTC9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92623   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92623  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92623
PhosPhoSitePlusQ92623
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC9
SuperfamilyQ92623
AlphaFold pdb e-kbQ92623   
Human Protein Atlas [tissue]ENSG00000133985-TTC9 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q92623
IntAct (EBI)Q92623
BioGRIDTTC9
STRING (EMBL)TTC9
ZODIACTTC9
Ontologies - Pathways
QuickGOQ92623
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC9
Atlas of Cancer Signalling NetworkTTC9
Wikipedia pathwaysTTC9
Orthology - Evolution
OrthoDB23508
GeneTree (enSembl)ENSG00000133985
Phylogenetic Trees/Animal Genes : TreeFamTTC9
Homologs : HomoloGeneTTC9
Homology/Alignments : Family Browser (UCSC)TTC9
Gene fusions - Rearrangements
Fusion : QuiverTTC9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC9
dbVarTTC9
ClinVarTTC9
MonarchTTC9
1000_GenomesTTC9 
Exome Variant ServerTTC9
GNOMAD BrowserENSG00000133985
Varsome BrowserTTC9
ACMGTTC9 variants
VarityQ92623
Genomic Variants (DGV)TTC9 [DGVbeta]
DECIPHERTTC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC9 
Mutations
ICGC Data PortalTTC9 
TCGA Data PortalTTC9 
Broad Tumor PortalTTC9
OASIS PortalTTC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC9
Mutations and Diseases : HGMDTTC9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC9
DgiDB (Drug Gene Interaction Database)TTC9
DoCM (Curated mutations)TTC9
CIViC (Clinical Interpretations of Variants in Cancer)TTC9
Cancer3DTTC9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610488   
Orphanet
DisGeNETTTC9
MedgenTTC9
Genetic Testing Registry TTC9
NextProtQ92623 [Medical]
GENETestsTTC9
Target ValidationTTC9
Huge Navigator TTC9 [HugePedia]
ClinGenTTC9
Clinical trials, drugs, therapy
MyCancerGenomeTTC9
Protein Interactions : CTDTTC9
Pharm GKB GenePA134905515
PharosQ92623
Clinical trialTTC9
Miscellaneous
canSAR (ICR)TTC9
HarmonizomeTTC9
DataMed IndexTTC9
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:44 CEST 2021

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