Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC9 (tetratricopeptide repeat domain 9)

Identity

Alias_symbol (synonym)KIAA0227
TTC9A
Other alias
HGNC (Hugo) TTC9
LocusID (NCBI) 23508
Atlas_Id 50601
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 71108504 and ends at 71142077 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC9   20267
Cards
Entrez_Gene (NCBI)TTC9  23508  tetratricopeptide repeat domain 9
AliasesTTC9A
GeneCards (Weizmann)TTC9
Ensembl hg19 (Hinxton)ENSG00000133985 [Gene_View]  chr14:71108504-71142077 [Contig_View]  TTC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133985 [Gene_View]  chr14:71108504-71142077 [Contig_View]  TTC9 [Vega]
ICGC DataPortalENSG00000133985
TCGA cBioPortalTTC9
AceView (NCBI)TTC9
Genatlas (Paris)TTC9
WikiGenes23508
SOURCE (Princeton)TTC9
Genetics Home Reference (NIH)TTC9
Genomic and cartography
GoldenPath hg19 (UCSC)TTC9  -     chr14:71108504-71142077 +  14q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTC9  -     14q24.2   [Description]    (hg38-Dec_2013)
EnsemblTTC9 - 14q24.2 [CytoView hg19]  TTC9 - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBITTC9 [Mapview hg19]  TTC9 [Mapview hg38]
OMIM610488   
Gene and transcription
Genbank (Entrez)BC047950 BC160145 BX407741 D86980
RefSeq transcript (Entrez)NM_015351
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_012648 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)TTC9
Cluster EST : UnigeneHs.79170 [ NCBI ]
CGAP (NCI)Hs.79170
Alternative Splicing GalleryENSG00000133985
Gene ExpressionTTC9 [ NCBI-GEO ]   TTC9 [ EBI - ARRAY_EXPRESS ]   TTC9 [ SEEK ]   TTC9 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23508
GTEX Portal (Tissue expression)TTC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92623   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92623  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92623
Splice isoforms : SwissVarQ92623
PhosPhoSitePlusQ92623
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)PPIase_FKBP    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC9
DMDM Disease mutations23508
Blocks (Seattle)TTC9
SuperfamilyQ92623
Human Protein AtlasENSG00000133985
Peptide AtlasQ92623
IPIIPI00852749   IPI00985009   
Protein Interaction databases
DIP (DOE-UCLA)Q92623
IntAct (EBI)Q92623
FunCoupENSG00000133985
BioGRIDTTC9
STRING (EMBL)TTC9
ZODIACTTC9
Ontologies - Pathways
QuickGOQ92623
Ontology : AmiGOprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  FK506 binding  endoplasmic reticulum membrane  chaperone-mediated protein folding  
Ontology : EGO-EBIprotein peptidyl-prolyl isomerization  peptidyl-prolyl cis-trans isomerase activity  FK506 binding  endoplasmic reticulum membrane  chaperone-mediated protein folding  
NDEx NetworkTTC9
Atlas of Cancer Signalling NetworkTTC9
Wikipedia pathwaysTTC9
Orthology - Evolution
OrthoDB23508
GeneTree (enSembl)ENSG00000133985
Phylogenetic Trees/Animal Genes : TreeFamTTC9
HOVERGENQ92623
HOGENOMQ92623
Homologs : HomoloGeneTTC9
Homology/Alignments : Family Browser (UCSC)TTC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC9
dbVarTTC9
ClinVarTTC9
1000_GenomesTTC9 
Exome Variant ServerTTC9
ExAC (Exome Aggregation Consortium)TTC9 (select the gene name)
Genetic variants : HAPMAP23508
Genomic Variants (DGV)TTC9 [DGVbeta]
DECIPHER (Syndromes)14:71108504-71142077  ENSG00000133985
CONAN: Copy Number AnalysisTTC9 
Mutations
ICGC Data PortalTTC9 
TCGA Data PortalTTC9 
Broad Tumor PortalTTC9
OASIS PortalTTC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC9
DgiDB (Drug Gene Interaction Database)TTC9
DoCM (Curated mutations)TTC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC9 (select a term)
intoGenTTC9
Cancer3DTTC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610488   
Orphanet
MedgenTTC9
Genetic Testing Registry TTC9
NextProtQ92623 [Medical]
TSGene23508
GENETestsTTC9
Huge Navigator TTC9 [HugePedia]
snp3D : Map Gene to Disease23508
BioCentury BCIQTTC9
ClinGenTTC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23508
Chemical/Pharm GKB GenePA134905515
Clinical trialTTC9
Miscellaneous
canSAR (ICR)TTC9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC9
EVEXTTC9
GoPubMedTTC9
iHOPTTC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:46 CEST 2017

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