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TTC9B (tetratricopeptide repeat domain 9B)

Identity

Alias_symbol (synonym)FLJ30373
Other alias-
HGNC (Hugo) TTC9B
LocusID (NCBI) 148014
Atlas_Id 75302
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40216058 and ends at 40218399 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC9B   26395
Cards
Entrez_Gene (NCBI)TTC9B  148014  tetratricopeptide repeat domain 9B
Aliases
GeneCards (Weizmann)TTC9B
Ensembl hg19 (Hinxton)ENSG00000174521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174521 [Gene_View]  chr19:40216058-40218399 [Contig_View]  TTC9B [Vega]
ICGC DataPortalENSG00000174521
TCGA cBioPortalTTC9B
AceView (NCBI)TTC9B
Genatlas (Paris)TTC9B
WikiGenes148014
SOURCE (Princeton)TTC9B
Genetics Home Reference (NIH)TTC9B
Genomic and cartography
GoldenPath hg38 (UCSC)TTC9B  -     chr19:40216058-40218399 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC9B  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblTTC9B - 19q13.2 [CytoView hg19]  TTC9B - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBITTC9B [Mapview hg19]  TTC9B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054935 AK289550 BC029539 CA432622
RefSeq transcript (Entrez)NM_152479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC9B
Cluster EST : UnigeneHs.631572 [ NCBI ]
CGAP (NCI)Hs.631572
Alternative Splicing GalleryENSG00000174521
Gene ExpressionTTC9B [ NCBI-GEO ]   TTC9B [ EBI - ARRAY_EXPRESS ]   TTC9B [ SEEK ]   TTC9B [ MEM ]
Gene Expression Viewer (FireBrowse)TTC9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148014
GTEX Portal (Tissue expression)TTC9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6N2
Splice isoforms : SwissVarQ8N6N2
PhosPhoSitePlusQ8N6N2
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)PPIase_FKBP    TPR-contain_dom    TPR-like_helical_dom    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC9B
DMDM Disease mutations148014
Blocks (Seattle)TTC9B
SuperfamilyQ8N6N2
Human Protein AtlasENSG00000174521
Peptide AtlasQ8N6N2
HPRD08329
IPIIPI00410309   IPI00478295   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6N2
IntAct (EBI)Q8N6N2
FunCoupENSG00000174521
BioGRIDTTC9B
STRING (EMBL)TTC9B
ZODIACTTC9B
Ontologies - Pathways
QuickGOQ8N6N2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkTTC9B
Atlas of Cancer Signalling NetworkTTC9B
Wikipedia pathwaysTTC9B
Orthology - Evolution
OrthoDB148014
GeneTree (enSembl)ENSG00000174521
Phylogenetic Trees/Animal Genes : TreeFamTTC9B
HOVERGENQ8N6N2
HOGENOMQ8N6N2
Homologs : HomoloGeneTTC9B
Homology/Alignments : Family Browser (UCSC)TTC9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC9B
dbVarTTC9B
ClinVarTTC9B
1000_GenomesTTC9B 
Exome Variant ServerTTC9B
ExAC (Exome Aggregation Consortium)TTC9B (select the gene name)
Genetic variants : HAPMAP148014
Genomic Variants (DGV)TTC9B [DGVbeta]
DECIPHERTTC9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC9B 
Mutations
ICGC Data PortalTTC9B 
TCGA Data PortalTTC9B 
Broad Tumor PortalTTC9B
OASIS PortalTTC9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC9B
DgiDB (Drug Gene Interaction Database)TTC9B
DoCM (Curated mutations)TTC9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC9B (select a term)
intoGenTTC9B
Cancer3DTTC9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC9B
Genetic Testing Registry TTC9B
NextProtQ8N6N2 [Medical]
TSGene148014
GENETestsTTC9B
Target ValidationTTC9B
Huge Navigator TTC9B [HugePedia]
snp3D : Map Gene to Disease148014
BioCentury BCIQTTC9B
ClinGenTTC9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148014
Chemical/Pharm GKB GenePA142670684
Clinical trialTTC9B
Miscellaneous
canSAR (ICR)TTC9B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC9B
EVEXTTC9B
GoPubMedTTC9B
iHOPTTC9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:52 CEST 2017

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