Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC9B (tetratricopeptide repeat domain 9B)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC9B
HGNC Alias symbFLJ30373
LocusID (NCBI) 148014
Atlas_Id 75302
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40216058 and ends at 40218399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC9B   26395
Cards
Entrez_Gene (NCBI)TTC9B    tetratricopeptide repeat domain 9B
Aliases
GeneCards (Weizmann)TTC9B
Ensembl hg19 (Hinxton)ENSG00000174521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174521 [Gene_View]  ENSG00000174521 [Sequence]  chr19:40216058-40218399 [Contig_View]  TTC9B [Vega]
ICGC DataPortalENSG00000174521
TCGA cBioPortalTTC9B
AceView (NCBI)TTC9B
Genatlas (Paris)TTC9B
SOURCE (Princeton)TTC9B
Genetics Home Reference (NIH)TTC9B
Genomic and cartography
GoldenPath hg38 (UCSC)TTC9B  -     chr19:40216058-40218399 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC9B  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTTC9B - 19q13.2 [CytoView hg19]  TTC9B - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000174521
Genome Data Viewer NCBITTC9B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK054935 AK289550 BC029539 CA432622
RefSeq transcript (Entrez)NM_152479
Consensus coding sequences : CCDS (NCBI)TTC9B
Gene ExpressionTTC9B [ NCBI-GEO ]   TTC9B [ EBI - ARRAY_EXPRESS ]   TTC9B [ SEEK ]   TTC9B [ MEM ]
Gene Expression Viewer (FireBrowse)TTC9B [ Firebrowse - Broad ]
GenevisibleExpression of TTC9B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148014
GTEX Portal (Tissue expression)TTC9B
Human Protein AtlasENSG00000174521-TTC9B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6N2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6N2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6N2
PhosPhoSitePlusQ8N6N2
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC9B
SuperfamilyQ8N6N2
AlphaFold pdb e-kbQ8N6N2   
Human Protein Atlas [tissue]ENSG00000174521-TTC9B [tissue]
HPRD08329
Protein Interaction databases
DIP (DOE-UCLA)Q8N6N2
IntAct (EBI)Q8N6N2
BioGRIDTTC9B
STRING (EMBL)TTC9B
ZODIACTTC9B
Ontologies - Pathways
QuickGOQ8N6N2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkTTC9B
Atlas of Cancer Signalling NetworkTTC9B
Wikipedia pathwaysTTC9B
Orthology - Evolution
OrthoDB148014
GeneTree (enSembl)ENSG00000174521
Phylogenetic Trees/Animal Genes : TreeFamTTC9B
Homologs : HomoloGeneTTC9B
Homology/Alignments : Family Browser (UCSC)TTC9B
Gene fusions - Rearrangements
Fusion : QuiverTTC9B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC9B
dbVarTTC9B
ClinVarTTC9B
MonarchTTC9B
1000_GenomesTTC9B 
Exome Variant ServerTTC9B
GNOMAD BrowserENSG00000174521
Varsome BrowserTTC9B
ACMGTTC9B variants
VarityQ8N6N2
Genomic Variants (DGV)TTC9B [DGVbeta]
DECIPHERTTC9B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC9B 
Mutations
ICGC Data PortalTTC9B 
TCGA Data PortalTTC9B 
Broad Tumor PortalTTC9B
OASIS PortalTTC9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC9B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC9B
Mutations and Diseases : HGMDTTC9B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC9B
DgiDB (Drug Gene Interaction Database)TTC9B
DoCM (Curated mutations)TTC9B
CIViC (Clinical Interpretations of Variants in Cancer)TTC9B
Cancer3DTTC9B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC9B
MedgenTTC9B
Genetic Testing Registry TTC9B
NextProtQ8N6N2 [Medical]
GENETestsTTC9B
Target ValidationTTC9B
Huge Navigator TTC9B [HugePedia]
ClinGenTTC9B
Clinical trials, drugs, therapy
MyCancerGenomeTTC9B
Protein Interactions : CTDTTC9B
Pharm GKB GenePA142670684
PharosQ8N6N2
Clinical trialTTC9B
Miscellaneous
canSAR (ICR)TTC9B
HarmonizomeTTC9B
DataMed IndexTTC9B
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:21 CEST 2021

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