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TTC9C (tetratricopeptide repeat domain 9C)

Identity

Alias_symbol (synonym)MGC29649
Other alias-
HGNC (Hugo) TTC9C
LocusID (NCBI) 283237
Atlas_Id 75303
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62728073 and ends at 62738636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPUL2 (11q12.3) / TTC9C (11q12.3)PARVA (11p15.3) / TTC9C (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC9C   28432
Cards
Entrez_Gene (NCBI)TTC9C  283237  tetratricopeptide repeat domain 9C
Aliases
GeneCards (Weizmann)TTC9C
Ensembl hg19 (Hinxton)ENSG00000162222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162222 [Gene_View]  chr11:62728073-62738636 [Contig_View]  TTC9C [Vega]
ICGC DataPortalENSG00000162222
TCGA cBioPortalTTC9C
AceView (NCBI)TTC9C
Genatlas (Paris)TTC9C
WikiGenes283237
SOURCE (Princeton)TTC9C
Genetics Home Reference (NIH)TTC9C
Genomic and cartography
GoldenPath hg38 (UCSC)TTC9C  -     chr11:62728073-62738636 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC9C  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblTTC9C - 11q12.3 [CytoView hg19]  TTC9C - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBITTC9C [Mapview hg19]  TTC9C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF289605 AF451992 AF451993 BC032123 BC053665
RefSeq transcript (Entrez)NM_001318812 NM_001318813 NM_001318814 NM_001318815 NM_001318816 NM_173810
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC9C
Cluster EST : UnigeneHs.31704 [ NCBI ]
CGAP (NCI)Hs.31704
Alternative Splicing GalleryENSG00000162222
Gene ExpressionTTC9C [ NCBI-GEO ]   TTC9C [ EBI - ARRAY_EXPRESS ]   TTC9C [ SEEK ]   TTC9C [ MEM ]
Gene Expression Viewer (FireBrowse)TTC9C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283237
GTEX Portal (Tissue expression)TTC9C
Human Protein AtlasENSG00000162222-TTC9C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5M4
Splice isoforms : SwissVarQ8N5M4
PhosPhoSitePlusQ8N5M4
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)PPIase_FKBP    TPR-contain_dom    TPR-like_helical_dom    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC9C
DMDM Disease mutations283237
Blocks (Seattle)TTC9C
SuperfamilyQ8N5M4
Human Protein Atlas [tissue]ENSG00000162222-TTC9C [tissue]
Peptide AtlasQ8N5M4
HPRD14530
IPIIPI00175096   IPI00179408   IPI00984886   IPI00980925   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5M4
IntAct (EBI)Q8N5M4
FunCoupENSG00000162222
BioGRIDTTC9C
STRING (EMBL)TTC9C
ZODIACTTC9C
Ontologies - Pathways
QuickGOQ8N5M4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTTC9C
Atlas of Cancer Signalling NetworkTTC9C
Wikipedia pathwaysTTC9C
Orthology - Evolution
OrthoDB283237
GeneTree (enSembl)ENSG00000162222
Phylogenetic Trees/Animal Genes : TreeFamTTC9C
HOVERGENQ8N5M4
HOGENOMQ8N5M4
Homologs : HomoloGeneTTC9C
Homology/Alignments : Family Browser (UCSC)TTC9C
Gene fusions - Rearrangements
Fusion: Tumor Portal TTC9C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC9C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC9C
dbVarTTC9C
ClinVarTTC9C
1000_GenomesTTC9C 
Exome Variant ServerTTC9C
ExAC (Exome Aggregation Consortium)ENSG00000162222
GNOMAD BrowserENSG00000162222
Genetic variants : HAPMAP283237
Genomic Variants (DGV)TTC9C [DGVbeta]
DECIPHERTTC9C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC9C 
Mutations
ICGC Data PortalTTC9C 
TCGA Data PortalTTC9C 
Broad Tumor PortalTTC9C
OASIS PortalTTC9C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC9C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC9C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC9C
DgiDB (Drug Gene Interaction Database)TTC9C
DoCM (Curated mutations)TTC9C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC9C (select a term)
intoGenTTC9C
Cancer3DTTC9C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC9C
Genetic Testing Registry TTC9C
NextProtQ8N5M4 [Medical]
TSGene283237
GENETestsTTC9C
Target ValidationTTC9C
Huge Navigator TTC9C [HugePedia]
snp3D : Map Gene to Disease283237
BioCentury BCIQTTC9C
ClinGenTTC9C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283237
Chemical/Pharm GKB GenePA142670685
Clinical trialTTC9C
Miscellaneous
canSAR (ICR)TTC9C (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC9C
EVEXTTC9C
GoPubMedTTC9C
iHOPTTC9C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:27 CET 2017

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