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TTI1 (TELO2 interacting protein 1)

Identity

Alias (NCBI)KIAA0406
smg-10
HGNC (Hugo) TTI1
HGNC Alias symbsmg-10
HGNC Alias namesmg-10 homolog, nonsense mediated mRNA decay factor (C. elegans)
HGNC Previous nameKIAA0406
HGNC Previous nameKIAA0406
 Tel2 interacting protein 1 homolog (S. pombe)
LocusID (NCBI) 9675
Atlas_Id 75305
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 37983007 and ends at 38033468 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTNNBL1 (20q11.23) / TTI1 (20q11.23)DIDO1 (20q13.33) / TTI1 (20q11.23)PPP1R16B (20q11.23) / TTI1 (20q11.23)
PPP1R16B TTI1CTNNBL1 TTI1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  CTNNBL1/TTI1 (20q11)
PPP1R16B/TTI1 (20q11)


External links

Nomenclature
HGNC (Hugo)TTI1   29029
Cards
Entrez_Gene (NCBI)TTI1  9675  TELO2 interacting protein 1
AliasesKIAA0406; smg-10
GeneCards (Weizmann)TTI1
Ensembl hg19 (Hinxton)ENSG00000101407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101407 [Gene_View]  ENSG00000101407 [Sequence]  chr20:37983007-38033468 [Contig_View]  TTI1 [Vega]
ICGC DataPortalENSG00000101407
TCGA cBioPortalTTI1
AceView (NCBI)TTI1
Genatlas (Paris)TTI1
WikiGenes9675
SOURCE (Princeton)TTI1
Genetics Home Reference (NIH)TTI1
Genomic and cartography
GoldenPath hg38 (UCSC)TTI1  -     chr20:37983007-38033468 -  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTI1  -     20q11.23   [Description]    (hg19-Feb_2009)
GoldenPathTTI1 - 20q11.23 [CytoView hg19]  TTI1 - 20q11.23 [CytoView hg38]
ImmunoBaseENSG00000101407
genome Data Viewer NCBITTI1 [Mapview hg19]  
OMIM614425   
Gene and transcription
Genbank (Entrez)AB007866 AK095451 AK308164 BC013121 BC013755
RefSeq transcript (Entrez)NM_001303457 NM_014657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTI1
Alternative Splicing GalleryENSG00000101407
Gene ExpressionTTI1 [ NCBI-GEO ]   TTI1 [ EBI - ARRAY_EXPRESS ]   TTI1 [ SEEK ]   TTI1 [ MEM ]
Gene Expression Viewer (FireBrowse)TTI1 [ Firebrowse - Broad ]
GenevisibleExpression of TTI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9675
GTEX Portal (Tissue expression)TTI1
Human Protein AtlasENSG00000101407-TTI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43156   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43156  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43156
Splice isoforms : SwissVarO43156
PhosPhoSitePlusO43156
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Tti1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTI1
DMDM Disease mutations9675
Blocks (Seattle)TTI1
SuperfamilyO43156
Human Protein Atlas [tissue]ENSG00000101407-TTI1 [tissue]
Peptide AtlasO43156
HPRD13799
IPIIPI00011702   
Protein Interaction databases
DIP (DOE-UCLA)O43156
IntAct (EBI)O43156
FunCoupENSG00000101407
BioGRIDTTI1
STRING (EMBL)TTI1
ZODIACTTI1
Ontologies - Pathways
QuickGOO43156
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  TORC1 complex  TORC1 complex  TORC2 complex  TORC2 complex  regulation of TOR signaling  regulation of TOR signaling  ASTRA complex  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  TORC1 complex  TORC1 complex  TORC2 complex  TORC2 complex  regulation of TOR signaling  regulation of TOR signaling  ASTRA complex  
NDEx NetworkTTI1
Atlas of Cancer Signalling NetworkTTI1
Wikipedia pathwaysTTI1
Orthology - Evolution
OrthoDB9675
GeneTree (enSembl)ENSG00000101407
Phylogenetic Trees/Animal Genes : TreeFamTTI1
HOGENOMO43156
Homologs : HomoloGeneTTI1
Homology/Alignments : Family Browser (UCSC)TTI1
Gene fusions - Rearrangements
Fusion PortalPPP1R16B TTI1
Fusion PortalCTNNBL1 TTI1
Fusion : QuiverTTI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTI1
dbVarTTI1
ClinVarTTI1
1000_GenomesTTI1 
Exome Variant ServerTTI1
GNOMAD BrowserENSG00000101407
Varsome BrowserTTI1
Genetic variants : HAPMAP9675
Genomic Variants (DGV)TTI1 [DGVbeta]
DECIPHERTTI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTI1 
Mutations
ICGC Data PortalTTI1 
TCGA Data PortalTTI1 
Broad Tumor PortalTTI1
OASIS PortalTTI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTI1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTI1
Mutations and Diseases : HGMDTTI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTI1
DgiDB (Drug Gene Interaction Database)TTI1
DoCM (Curated mutations)TTI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTI1 (select a term)
intoGenTTI1
Cancer3DTTI1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614425   
Orphanet
DisGeNETTTI1
MedgenTTI1
Genetic Testing Registry TTI1
NextProtO43156 [Medical]
TSGene9675
GENETestsTTI1
Target ValidationTTI1
Huge Navigator TTI1 [HugePedia]
snp3D : Map Gene to Disease9675
BioCentury BCIQTTI1
ClinGenTTI1
Clinical trials, drugs, therapy
Protein Interactions : CTD9675
Pharm GKB GenePA165392722
Clinical trialTTI1
Miscellaneous
canSAR (ICR)TTI1 (select the gene name)
HarmonizomeTTI1
DataMed IndexTTI1
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTI1
EVEXTTI1
GoPubMedTTI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:34:24 CEST 2020

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