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TTLL10 (tubulin tyrosine ligase-like family member 10)

Identity

Alias_namesTTLL5
tubulin tyrosine ligase-like family, member 5
tubulin tyrosine ligase-like family member 10
Alias_symbol (synonym)FLJ36119
Other alias
HGNC (Hugo) TTLL10
LocusID (NCBI) 254173
Atlas_Id 75308
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1109286 and ends at 1133313 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL10   26693
Cards
Entrez_Gene (NCBI)TTLL10  254173  tubulin tyrosine ligase-like family member 10
AliasesTTLL5
GeneCards (Weizmann)TTLL10
Ensembl hg19 (Hinxton)ENSG00000162571 [Gene_View]  chr1:1109286-1133313 [Contig_View]  TTLL10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162571 [Gene_View]  chr1:1109286-1133313 [Contig_View]  TTLL10 [Vega]
ICGC DataPortalENSG00000162571
TCGA cBioPortalTTLL10
AceView (NCBI)TTLL10
Genatlas (Paris)TTLL10
WikiGenes254173
SOURCE (Princeton)TTLL10
Genetics Home Reference (NIH)TTLL10
Genomic and cartography
GoldenPath hg19 (UCSC)TTLL10  -     chr1:1109286-1133313 +  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTLL10  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblTTLL10 - 1p36.33 [CytoView hg19]  TTLL10 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBITTLL10 [Mapview hg19]  TTLL10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093438 AK124125 BC027945 BC126152 BC126154
RefSeq transcript (Entrez)NM_001130045 NM_153254
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)TTLL10
Cluster EST : UnigeneHs.454835 [ NCBI ]
CGAP (NCI)Hs.454835
Alternative Splicing GalleryENSG00000162571
Gene ExpressionTTLL10 [ NCBI-GEO ]   TTLL10 [ EBI - ARRAY_EXPRESS ]   TTLL10 [ SEEK ]   TTLL10 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254173
GTEX Portal (Tissue expression)TTLL10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVT0
Splice isoforms : SwissVarQ6ZVT0
PhosPhoSitePlusQ6ZVT0
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam    TTLL10   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL10
DMDM Disease mutations254173
Blocks (Seattle)TTLL10
SuperfamilyQ6ZVT0
Human Protein AtlasENSG00000162571
Peptide AtlasQ6ZVT0
HPRD08771
IPIIPI00790556   IPI00889194   IPI00641937   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVT0
IntAct (EBI)Q6ZVT0
FunCoupENSG00000162571
BioGRIDTTLL10
STRING (EMBL)TTLL10
ZODIACTTLL10
Ontologies - Pathways
QuickGOQ6ZVT0
Ontology : AmiGOprotein binding  protein polyglycylation  protein-glycine ligase activity  
Ontology : EGO-EBIprotein binding  protein polyglycylation  protein-glycine ligase activity  
NDEx NetworkTTLL10
Atlas of Cancer Signalling NetworkTTLL10
Wikipedia pathwaysTTLL10
Orthology - Evolution
OrthoDB254173
GeneTree (enSembl)ENSG00000162571
Phylogenetic Trees/Animal Genes : TreeFamTTLL10
HOVERGENQ6ZVT0
HOGENOMQ6ZVT0
Homologs : HomoloGeneTTLL10
Homology/Alignments : Family Browser (UCSC)TTLL10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL10
dbVarTTLL10
ClinVarTTLL10
1000_GenomesTTLL10 
Exome Variant ServerTTLL10
ExAC (Exome Aggregation Consortium)TTLL10 (select the gene name)
Genetic variants : HAPMAP254173
Genomic Variants (DGV)TTLL10 [DGVbeta]
DECIPHER (Syndromes)1:1109286-1133313  ENSG00000162571
CONAN: Copy Number AnalysisTTLL10 
Mutations
ICGC Data PortalTTLL10 
TCGA Data PortalTTLL10 
Broad Tumor PortalTTLL10
OASIS PortalTTLL10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL10
DgiDB (Drug Gene Interaction Database)TTLL10
DoCM (Curated mutations)TTLL10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL10 (select a term)
intoGenTTLL10
Cancer3DTTLL10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL10
Genetic Testing Registry TTLL10
NextProtQ6ZVT0 [Medical]
TSGene254173
GENETestsTTLL10
Huge Navigator TTLL10 [HugePedia]
snp3D : Map Gene to Disease254173
BioCentury BCIQTTLL10
ClinGenTTLL10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254173
Chemical/Pharm GKB GenePA142670679
Clinical trialTTLL10
Miscellaneous
canSAR (ICR)TTLL10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL10
EVEXTTLL10
GoPubMedTTLL10
iHOPTTLL10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:13 CET 2017

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