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TTLL11 (tubulin tyrosine ligase-like family member 11)

Identity

Alias_namesC9orf20
chromosome 9 open reading frame 20
tubulin tyrosine ligase-like family member 11
Alias_symbol (synonym)bA244O19.1
Other alias
HGNC (Hugo) TTLL11
LocusID (NCBI) 158135
Atlas_Id 75310
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 124584204 and ends at 124855885 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
STOM (9q33.2) / TTLL11 (9q33.2)TTLL11 (9q33.2) / VWCE (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL11   18113
Cards
Entrez_Gene (NCBI)TTLL11  158135  tubulin tyrosine ligase-like family member 11
AliasesC9orf20; bA244O19.1
GeneCards (Weizmann)TTLL11
Ensembl hg19 (Hinxton)ENSG00000175764 [Gene_View]  chr9:124584204-124855885 [Contig_View]  TTLL11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175764 [Gene_View]  chr9:124584204-124855885 [Contig_View]  TTLL11 [Vega]
ICGC DataPortalENSG00000175764
TCGA cBioPortalTTLL11
AceView (NCBI)TTLL11
Genatlas (Paris)TTLL11
WikiGenes158135
SOURCE (Princeton)TTLL11
Genetics Home Reference (NIH)TTLL11
Genomic and cartography
GoldenPath hg19 (UCSC)TTLL11  -     chr9:124584204-124855885 -  9q33.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTLL11  -     9q33.2   [Description]    (hg38-Dec_2013)
EnsemblTTLL11 - 9q33.2 [CytoView hg19]  TTLL11 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBITTLL11 [Mapview hg19]  TTLL11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF521886 AF521887 AK055126 AK123875 AK125178
RefSeq transcript (Entrez)NM_001139442 NM_194252
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)TTLL11
Cluster EST : UnigeneHs.640663 [ NCBI ]
CGAP (NCI)Hs.640663
Alternative Splicing GalleryENSG00000175764
Gene ExpressionTTLL11 [ NCBI-GEO ]   TTLL11 [ EBI - ARRAY_EXPRESS ]   TTLL11 [ SEEK ]   TTLL11 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158135
GTEX Portal (Tissue expression)TTLL11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHH1
Splice isoforms : SwissVarQ8NHH1
Catalytic activity : Enzyme6.-.-.- [ Enzyme-Expasy ]   6.-.-.-6.-.-.- [ IntEnz-EBI ]   6.-.-.- [ BRENDA ]   6.-.-.- [ KEGG ]   
PhosPhoSitePlusQ8NHH1
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL11
DMDM Disease mutations158135
Blocks (Seattle)TTLL11
SuperfamilyQ8NHH1
Human Protein AtlasENSG00000175764
Peptide AtlasQ8NHH1
HPRD10047
IPIIPI00169261   IPI00844353   IPI00915343   IPI00552255   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHH1
IntAct (EBI)Q8NHH1
FunCoupENSG00000175764
BioGRIDTTLL11
STRING (EMBL)TTLL11
ZODIACTTLL11
Ontologies - Pathways
QuickGOQ8NHH1
Ontology : AmiGOcytoplasm  cytoskeleton  cilium  cellular protein modification process  ligase activity  
Ontology : EGO-EBIcytoplasm  cytoskeleton  cilium  cellular protein modification process  ligase activity  
NDEx NetworkTTLL11
Atlas of Cancer Signalling NetworkTTLL11
Wikipedia pathwaysTTLL11
Orthology - Evolution
OrthoDB158135
GeneTree (enSembl)ENSG00000175764
Phylogenetic Trees/Animal Genes : TreeFamTTLL11
HOVERGENQ8NHH1
HOGENOMQ8NHH1
Homologs : HomoloGeneTTLL11
Homology/Alignments : Family Browser (UCSC)TTLL11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL11
dbVarTTLL11
ClinVarTTLL11
1000_GenomesTTLL11 
Exome Variant ServerTTLL11
ExAC (Exome Aggregation Consortium)TTLL11 (select the gene name)
Genetic variants : HAPMAP158135
Genomic Variants (DGV)TTLL11 [DGVbeta]
DECIPHER (Syndromes)9:124584204-124855885  ENSG00000175764
CONAN: Copy Number AnalysisTTLL11 
Mutations
ICGC Data PortalTTLL11 
TCGA Data PortalTTLL11 
Broad Tumor PortalTTLL11
OASIS PortalTTLL11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL11
DgiDB (Drug Gene Interaction Database)TTLL11
DoCM (Curated mutations)TTLL11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL11 (select a term)
intoGenTTLL11
Cancer3DTTLL11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL11
Genetic Testing Registry TTLL11
NextProtQ8NHH1 [Medical]
TSGene158135
GENETestsTTLL11
Huge Navigator TTLL11 [HugePedia]
snp3D : Map Gene to Disease158135
BioCentury BCIQTTLL11
ClinGenTTLL11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158135
Chemical/Pharm GKB GenePA25977
Clinical trialTTLL11
Miscellaneous
canSAR (ICR)TTLL11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL11
EVEXTTLL11
GoPubMedTTLL11
iHOPTTLL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:14 CET 2017

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