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TTLL11 (tubulin tyrosine ligase like 11)

Identity

Alias (NCBI)C9orf148
C9orf20
TTLL11-IT1
bA244O19.1
HGNC (Hugo) TTLL11
HGNC Alias symbbA244O19.1
HGNC Previous nameC9orf20
HGNC Previous namechromosome 9 open reading frame 20
 tubulin tyrosine ligase-like family member 11
LocusID (NCBI) 158135
Atlas_Id 75310
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 121988911 and ends at 122093606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
STOM (9q33.2) / TTLL11 (9q33.2)TTLL11 (9q33.2) / VWCE (11q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTLL11   18113
Cards
Entrez_Gene (NCBI)TTLL11    tubulin tyrosine ligase like 11
AliasesC9orf148; C9orf20; TTLL11-IT1; bA244O19.1
GeneCards (Weizmann)TTLL11
Ensembl hg19 (Hinxton)ENSG00000175764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175764 [Gene_View]  ENSG00000175764 [Sequence]  chr9:121988911-122093606 [Contig_View]  TTLL11 [Vega]
ICGC DataPortalENSG00000175764
TCGA cBioPortalTTLL11
AceView (NCBI)TTLL11
Genatlas (Paris)TTLL11
SOURCE (Princeton)TTLL11
Genetics Home Reference (NIH)TTLL11
Genomic and cartography
GoldenPath hg38 (UCSC)TTLL11  -     chr9:121988911-122093606 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTLL11  -     9q33.2   [Description]    (hg19-Feb_2009)
GoldenPathTTLL11 - 9q33.2 [CytoView hg19]  TTLL11 - 9q33.2 [CytoView hg38]
ImmunoBaseENSG00000175764
Genome Data Viewer NCBITTLL11 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF521886 AF521887 AK055126 AK123875 AK125178
RefSeq transcript (Entrez)NM_001139442 NM_001386831 NM_001386832 NM_001386833 NM_194252
Consensus coding sequences : CCDS (NCBI)TTLL11
Gene ExpressionTTLL11 [ NCBI-GEO ]   TTLL11 [ EBI - ARRAY_EXPRESS ]   TTLL11 [ SEEK ]   TTLL11 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL11 [ Firebrowse - Broad ]
GenevisibleExpression of TTLL11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158135
GTEX Portal (Tissue expression)TTLL11
Human Protein AtlasENSG00000175764-TTLL11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHH1
PhosPhoSitePlusQ8NHH1
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)ATP_grasp_subdomain_1    TTL/TTLL_fam   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL11
SuperfamilyQ8NHH1
AlphaFold pdb e-kbQ8NHH1   
Human Protein Atlas [tissue]ENSG00000175764-TTLL11 [tissue]
HPRD10047
Protein Interaction databases
DIP (DOE-UCLA)Q8NHH1
IntAct (EBI)Q8NHH1
BioGRIDTTLL11
STRING (EMBL)TTLL11
ZODIACTTLL11
Ontologies - Pathways
QuickGOQ8NHH1
Ontology : AmiGOmicrotubule cytoskeleton organization  ATP binding  cytosol  microtubule  cilium  tubulin binding  protein polyglutamylation  protein polyglutamylation  ciliary basal body  microtubule severing  tubulin-glutamic acid ligase activity  
Ontology : EGO-EBImicrotubule cytoskeleton organization  ATP binding  cytosol  microtubule  cilium  tubulin binding  protein polyglutamylation  protein polyglutamylation  ciliary basal body  microtubule severing  tubulin-glutamic acid ligase activity  
NDEx NetworkTTLL11
Atlas of Cancer Signalling NetworkTTLL11
Wikipedia pathwaysTTLL11
Orthology - Evolution
OrthoDB158135
GeneTree (enSembl)ENSG00000175764
Phylogenetic Trees/Animal Genes : TreeFamTTLL11
Homologs : HomoloGeneTTLL11
Homology/Alignments : Family Browser (UCSC)TTLL11
Gene fusions - Rearrangements
Fusion : QuiverTTLL11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL11
dbVarTTLL11
ClinVarTTLL11
MonarchTTLL11
1000_GenomesTTLL11 
Exome Variant ServerTTLL11
GNOMAD BrowserENSG00000175764
Varsome BrowserTTLL11
ACMGTTLL11 variants
VarityQ8NHH1
Genomic Variants (DGV)TTLL11 [DGVbeta]
DECIPHERTTLL11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTLL11 
Mutations
ICGC Data PortalTTLL11 
TCGA Data PortalTTLL11 
Broad Tumor PortalTTLL11
OASIS PortalTTLL11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTLL11
Mutations and Diseases : HGMDTTLL11
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTLL11
DgiDB (Drug Gene Interaction Database)TTLL11
DoCM (Curated mutations)TTLL11
CIViC (Clinical Interpretations of Variants in Cancer)TTLL11
Cancer3DTTLL11
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTLL11
MedgenTTLL11
Genetic Testing Registry TTLL11
NextProtQ8NHH1 [Medical]
GENETestsTTLL11
Target ValidationTTLL11
Huge Navigator TTLL11 [HugePedia]
ClinGenTTLL11
Clinical trials, drugs, therapy
MyCancerGenomeTTLL11
Protein Interactions : CTDTTLL11
Pharm GKB GenePA25977
PharosQ8NHH1
Clinical trialTTLL11
Miscellaneous
canSAR (ICR)TTLL11
HarmonizomeTTLL11
DataMed IndexTTLL11
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTLL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:22 CEST 2021

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