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TTLL12 (tubulin tyrosine ligase like 12)

Identity

Alias_namestubulin tyrosine ligase-like family member 12
Alias_symbol (synonym)KIAA0153
Other aliasdJ526I14.2
HGNC (Hugo) TTLL12
LocusID (NCBI) 23170
Atlas_Id 51769
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 43166622 and ends at 43187131 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL12   28974
Cards
Entrez_Gene (NCBI)TTLL12  23170  tubulin tyrosine ligase like 12
AliasesdJ526I14.2
GeneCards (Weizmann)TTLL12
Ensembl hg19 (Hinxton)ENSG00000100304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100304 [Gene_View]  chr22:43166622-43187131 [Contig_View]  TTLL12 [Vega]
ICGC DataPortalENSG00000100304
TCGA cBioPortalTTLL12
AceView (NCBI)TTLL12
Genatlas (Paris)TTLL12
WikiGenes23170
SOURCE (Princeton)TTLL12
Genetics Home Reference (NIH)TTLL12
Genomic and cartography
GoldenPath hg38 (UCSC)TTLL12  -     chr22:43166622-43187131 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTLL12  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblTTLL12 - 22q13.2 [CytoView hg19]  TTLL12 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBITTLL12 [Mapview hg19]  TTLL12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123789 AK304464 AL590888 BC001070 BE785973
RefSeq transcript (Entrez)NM_015140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTLL12
Cluster EST : UnigeneHs.517670 [ NCBI ]
CGAP (NCI)Hs.517670
Alternative Splicing GalleryENSG00000100304
Gene ExpressionTTLL12 [ NCBI-GEO ]   TTLL12 [ EBI - ARRAY_EXPRESS ]   TTLL12 [ SEEK ]   TTLL12 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23170
GTEX Portal (Tissue expression)TTLL12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14166   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14166  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14166
Splice isoforms : SwissVarQ14166
PhosPhoSitePlusQ14166
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam    TTLL12   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL12
DMDM Disease mutations23170
Blocks (Seattle)TTLL12
SuperfamilyQ14166
Human Protein AtlasENSG00000100304
Peptide AtlasQ14166
HPRD13782
IPIIPI00029048   IPI00386569   IPI00879002   
Protein Interaction databases
DIP (DOE-UCLA)Q14166
IntAct (EBI)Q14166
FunCoupENSG00000100304
BioGRIDTTLL12
STRING (EMBL)TTLL12
ZODIACTTLL12
Ontologies - Pathways
QuickGOQ14166
Ontology : AmiGOcatalytic activity  ATP binding  cellular protein modification process  
Ontology : EGO-EBIcatalytic activity  ATP binding  cellular protein modification process  
NDEx NetworkTTLL12
Atlas of Cancer Signalling NetworkTTLL12
Wikipedia pathwaysTTLL12
Orthology - Evolution
OrthoDB23170
GeneTree (enSembl)ENSG00000100304
Phylogenetic Trees/Animal Genes : TreeFamTTLL12
HOVERGENQ14166
HOGENOMQ14166
Homologs : HomoloGeneTTLL12
Homology/Alignments : Family Browser (UCSC)TTLL12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL12
dbVarTTLL12
ClinVarTTLL12
1000_GenomesTTLL12 
Exome Variant ServerTTLL12
ExAC (Exome Aggregation Consortium)TTLL12 (select the gene name)
Genetic variants : HAPMAP23170
Genomic Variants (DGV)TTLL12 [DGVbeta]
DECIPHERTTLL12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTLL12 
Mutations
ICGC Data PortalTTLL12 
TCGA Data PortalTTLL12 
Broad Tumor PortalTTLL12
OASIS PortalTTLL12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL12
DgiDB (Drug Gene Interaction Database)TTLL12
DoCM (Curated mutations)TTLL12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL12 (select a term)
intoGenTTLL12
Cancer3DTTLL12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL12
Genetic Testing Registry TTLL12
NextProtQ14166 [Medical]
TSGene23170
GENETestsTTLL12
Target ValidationTTLL12
Huge Navigator TTLL12 [HugePedia]
snp3D : Map Gene to Disease23170
BioCentury BCIQTTLL12
ClinGenTTLL12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23170
Chemical/Pharm GKB GenePA143485663
Clinical trialTTLL12
Miscellaneous
canSAR (ICR)TTLL12 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL12
EVEXTTLL12
GoPubMedTTLL12
iHOPTTLL12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:01:16 CEST 2017

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