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TTLL13P (tubulin tyrosine ligase like 13, pseudogene)

Identity

Alias (NCBI)TTLL13
HGNC (Hugo) TTLL13P
HGNC Alias symbFLJ46079
MGC33417
HGNC Previous nameTTLL13
HGNC Previous nametubulin tyrosine ligase-like family, member 13
 tubulin tyrosine ligase-like family member 13, pseudogene
LocusID (NCBI) 440307
Atlas_Id 77634
Location 15q26.1  [Link to chromosome band 15q26]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IQGAP1 (15q26.1) / TTLL13P (15q26.1)TLK1 (2q31.1) / TTLL13P (15q26.1)TTLL13P (15q26.1) / ANK3 (10q21.2)
TTLL13P (15q26.1) / RAB1B (11q13.2)TTLL13P (15q26.1) / TTLL13P (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTLL13P   32484
Cards
Entrez_Gene (NCBI)TTLL13P    tubulin tyrosine ligase like 13, pseudogene
AliasesTTLL13
GeneCards (Weizmann)TTLL13P
Ensembl hg19 (Hinxton)ENSG00000213471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213471 [Gene_View]  ENSG00000213471 [Sequence]  - [Contig_View]  TTLL13P [Vega]
ICGC DataPortalENSG00000213471
TCGA cBioPortalTTLL13P
AceView (NCBI)TTLL13P
Genatlas (Paris)TTLL13P
SOURCE (Princeton)TTLL13P
Genetics Home Reference (NIH)TTLL13P
Genomic and cartography
GoldenPath hg38 (UCSC)TTLL13P  -  
GoldenPath hg19 (UCSC)TTLL13P  -  
GoldenPathTTLL13P - [CytoView hg19]  TTLL13P - [CytoView hg38]
ImmunoBaseENSG00000213471
Genome Data Viewer NCBITTLL13P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK127965 BC036668 BC144453
RefSeq transcript (Entrez)NM_001029964
Consensus coding sequences : CCDS (NCBI)TTLL13P
Gene ExpressionTTLL13P [ NCBI-GEO ]   TTLL13P [ EBI - ARRAY_EXPRESS ]   TTLL13P [ SEEK ]   TTLL13P [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL13P [ Firebrowse - Broad ]
GenevisibleExpression of TTLL13P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440307
GTEX Portal (Tissue expression)TTLL13P
Human Protein AtlasENSG00000213471-TTLL13P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNM8
Catalytic activity : Enzyme6.-.-.- [ Enzyme-Expasy ]   6.-.-.-6.-.-.- [ IntEnz-EBI ]   6.-.-.- [ BRENDA ]   6.-.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusA6NNM8
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)ATP_grasp_subdomain_1    TTL/TTLL_fam   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL13P
SuperfamilyA6NNM8
AlphaFold pdb e-kbA6NNM8   
Human Protein Atlas [tissue]ENSG00000213471-TTLL13P [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NNM8
IntAct (EBI)A6NNM8
BioGRIDTTLL13P
STRING (EMBL)TTLL13P
ZODIACTTLL13P
Ontologies - Pathways
QuickGOA6NNM8
Ontology : AmiGOmicrotubule cytoskeleton organization  ATP binding  cytosol  microtubule  cilium  tubulin binding  protein polyglutamylation  protein polyglutamylation  tubulin-glutamic acid ligase activity  
Ontology : EGO-EBImicrotubule cytoskeleton organization  ATP binding  cytosol  microtubule  cilium  tubulin binding  protein polyglutamylation  protein polyglutamylation  tubulin-glutamic acid ligase activity  
NDEx NetworkTTLL13P
Atlas of Cancer Signalling NetworkTTLL13P
Wikipedia pathwaysTTLL13P
Orthology - Evolution
OrthoDB440307
GeneTree (enSembl)ENSG00000213471
Phylogenetic Trees/Animal Genes : TreeFamTTLL13P
Homologs : HomoloGeneTTLL13P
Homology/Alignments : Family Browser (UCSC)TTLL13P
Gene fusions - Rearrangements
Fusion : QuiverTTLL13P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL13P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL13P
dbVarTTLL13P
ClinVarTTLL13P
MonarchTTLL13P
1000_GenomesTTLL13P 
Exome Variant ServerTTLL13P
GNOMAD BrowserENSG00000213471
Varsome BrowserTTLL13P
ACMGTTLL13P variants
VarityA6NNM8
Genomic Variants (DGV)TTLL13P [DGVbeta]
DECIPHERTTLL13P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTLL13P 
Mutations
ICGC Data PortalTTLL13P 
TCGA Data PortalTTLL13P 
Broad Tumor PortalTTLL13P
OASIS PortalTTLL13P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL13P  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTLL13P
Mutations and Diseases : HGMDTTLL13P
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTLL13P
DgiDB (Drug Gene Interaction Database)TTLL13P
DoCM (Curated mutations)TTLL13P
CIViC (Clinical Interpretations of Variants in Cancer)TTLL13P
Cancer3DTTLL13P
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTLL13P
MedgenTTLL13P
Genetic Testing Registry TTLL13P
NextProtA6NNM8 [Medical]
GENETestsTTLL13P
Target ValidationTTLL13P
Huge Navigator TTLL13P [HugePedia]
ClinGenTTLL13P
Clinical trials, drugs, therapy
MyCancerGenomeTTLL13P
Protein Interactions : CTDTTLL13P
Pharm GKB GenePA143485664
PharosA6NNM8
Clinical trialTTLL13P
Miscellaneous
canSAR (ICR)TTLL13P
HarmonizomeTTLL13P
DataMed IndexTTLL13P
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTLL13P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:23 CEST 2021

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