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TTLL2 (tubulin tyrosine ligase-like family member 2)

Identity

Alias_namesC6orf104
chromosome 6 open reading frame 104
tubulin tyrosine ligase-like family member 2
Alias_symbol (synonym)NYD-TSPG
dJ366N23.3
Other alias
HGNC (Hugo) TTLL2
LocusID (NCBI) 83887
Atlas_Id 75313
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 167738574 and ends at 167756177 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL2   21211
Cards
Entrez_Gene (NCBI)TTLL2  83887  tubulin tyrosine ligase-like family member 2
AliasesC6orf104; NYD-TSPG; dJ366N23.3
GeneCards (Weizmann)TTLL2
Ensembl hg19 (Hinxton) [Gene_View]  chr6:167738574-167756177 [Contig_View]  TTLL2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:167738574-167756177 [Contig_View]  TTLL2 [Vega]
TCGA cBioPortalTTLL2
AceView (NCBI)TTLL2
Genatlas (Paris)TTLL2
WikiGenes83887
SOURCE (Princeton)TTLL2
Genetics Home Reference (NIH)TTLL2
Genomic and cartography
GoldenPath hg19 (UCSC)TTLL2  -     chr6:167738574-167756177 +  6q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTLL2  -     6q27   [Description]    (hg38-Dec_2013)
EnsemblTTLL2 - 6q27 [CytoView hg19]  TTLL2 - 6q27 [CytoView hg38]
Mapping of homologs : NCBITTLL2 [Mapview hg19]  TTLL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093039 AK098527 AK225984 AK301755 AK314450
RefSeq transcript (Entrez)NM_031949
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)TTLL2
Cluster EST : UnigeneHs.520554 [ NCBI ]
CGAP (NCI)Hs.520554
Gene ExpressionTTLL2 [ NCBI-GEO ]   TTLL2 [ EBI - ARRAY_EXPRESS ]   TTLL2 [ SEEK ]   TTLL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83887
GTEX Portal (Tissue expression)TTLL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWV7
Splice isoforms : SwissVarQ9BWV7
Catalytic activity : Enzyme6.-.-.- [ Enzyme-Expasy ]   6.-.-.-6.-.-.- [ IntEnz-EBI ]   6.-.-.- [ BRENDA ]   6.-.-.- [ KEGG ]   
PhosPhoSitePlusQ9BWV7
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam    TTLL2   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL2
DMDM Disease mutations83887
Blocks (Seattle)TTLL2
SuperfamilyQ9BWV7
Peptide AtlasQ9BWV7
HPRD18240
IPIIPI00410713   IPI01011464   IPI00968074   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWV7
IntAct (EBI)Q9BWV7
BioGRIDTTLL2
STRING (EMBL)TTLL2
ZODIACTTLL2
Ontologies - Pathways
QuickGOQ9BWV7
Ontology : AmiGOcellular protein modification process  ligase activity  
Ontology : EGO-EBIcellular protein modification process  ligase activity  
NDEx NetworkTTLL2
Atlas of Cancer Signalling NetworkTTLL2
Wikipedia pathwaysTTLL2
Orthology - Evolution
OrthoDB83887
Phylogenetic Trees/Animal Genes : TreeFamTTLL2
HOVERGENQ9BWV7
HOGENOMQ9BWV7
Homologs : HomoloGeneTTLL2
Homology/Alignments : Family Browser (UCSC)TTLL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL2
dbVarTTLL2
ClinVarTTLL2
1000_GenomesTTLL2 
Exome Variant ServerTTLL2
ExAC (Exome Aggregation Consortium)TTLL2 (select the gene name)
Genetic variants : HAPMAP83887
Genomic Variants (DGV)TTLL2 [DGVbeta]
DECIPHER (Syndromes)6:167738574-167756177  
CONAN: Copy Number AnalysisTTLL2 
Mutations
ICGC Data PortalTTLL2 
TCGA Data PortalTTLL2 
Broad Tumor PortalTTLL2
OASIS PortalTTLL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL2
DgiDB (Drug Gene Interaction Database)TTLL2
DoCM (Curated mutations)TTLL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL2 (select a term)
intoGenTTLL2
Cancer3DTTLL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL2
Genetic Testing Registry TTLL2
NextProtQ9BWV7 [Medical]
TSGene83887
GENETestsTTLL2
Huge Navigator TTLL2 [HugePedia]
snp3D : Map Gene to Disease83887
BioCentury BCIQTTLL2
ClinGenTTLL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83887
Chemical/Pharm GKB GenePA134888799
Clinical trialTTLL2
Miscellaneous
canSAR (ICR)TTLL2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL2
EVEXTTLL2
GoPubMedTTLL2
iHOPTTLL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:14 CET 2017

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