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TTLL7 (tubulin tyrosine ligase-like family member 7)

Identity

Alias_namestubulin tyrosine ligase-like family member 7
Alias_symbol (synonym)FLJ23033
Other alias-
HGNC (Hugo) TTLL7
LocusID (NCBI) 79739
Atlas_Id 75317
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 84335057 and ends at 84464833 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PHTF1 (1p13.2) / TTLL7 (1p31.1)TTLL7 (1p31.1) / GNG5 (1p22.3)TTLL7 (1p31.1) / SAMD13 (1p31.1)
TTLL7 (1p31.1) / TERT (5p15.33)TTLL7 TERTTTLL7 SAMD13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL7   26242
Cards
Entrez_Gene (NCBI)TTLL7  79739  tubulin tyrosine ligase-like family member 7
Aliases
GeneCards (Weizmann)TTLL7
Ensembl hg19 (Hinxton)ENSG00000137941 [Gene_View]  chr1:84335057-84464833 [Contig_View]  TTLL7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137941 [Gene_View]  chr1:84335057-84464833 [Contig_View]  TTLL7 [Vega]
ICGC DataPortalENSG00000137941
TCGA cBioPortalTTLL7
AceView (NCBI)TTLL7
Genatlas (Paris)TTLL7
WikiGenes79739
SOURCE (Princeton)TTLL7
Genetics Home Reference (NIH)TTLL7
Genomic and cartography
GoldenPath hg19 (UCSC)TTLL7  -     chr1:84335057-84464833 -  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTLL7  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblTTLL7 - 1p31.1 [CytoView hg19]  TTLL7 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBITTLL7 [Mapview hg19]  TTLL7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026686 AK094174 AK126792 AK128604 AK225574
RefSeq transcript (Entrez)NM_024686
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TTLL7
Cluster EST : UnigeneHs.445826 [ NCBI ]
CGAP (NCI)Hs.445826
Alternative Splicing GalleryENSG00000137941
Gene ExpressionTTLL7 [ NCBI-GEO ]   TTLL7 [ EBI - ARRAY_EXPRESS ]   TTLL7 [ SEEK ]   TTLL7 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79739
GTEX Portal (Tissue expression)TTLL7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT98
Splice isoforms : SwissVarQ6ZT98
Catalytic activity : Enzyme6.-.-.- [ Enzyme-Expasy ]   6.-.-.-6.-.-.- [ IntEnz-EBI ]   6.-.-.- [ BRENDA ]   6.-.-.- [ KEGG ]   
PhosPhoSitePlusQ6ZT98
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL7
DMDM Disease mutations79739
Blocks (Seattle)TTLL7
SuperfamilyQ6ZT98
Human Protein AtlasENSG00000137941
Peptide AtlasQ6ZT98
HPRD08013
IPIIPI00514795   IPI00643434   IPI00640491   IPI00977489   IPI00983088   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT98
IntAct (EBI)Q6ZT98
FunCoupENSG00000137941
BioGRIDTTLL7
STRING (EMBL)TTLL7
ZODIACTTLL7
Ontologies - Pathways
QuickGOQ6ZT98
Ontology : AmiGOcytoplasm  cytoskeleton  cilium  nervous system development  ligase activity  protein polyglutamylation  cell differentiation  dendrite  perikaryon  
Ontology : EGO-EBIcytoplasm  cytoskeleton  cilium  nervous system development  ligase activity  protein polyglutamylation  cell differentiation  dendrite  perikaryon  
NDEx NetworkTTLL7
Atlas of Cancer Signalling NetworkTTLL7
Wikipedia pathwaysTTLL7
Orthology - Evolution
OrthoDB79739
GeneTree (enSembl)ENSG00000137941
Phylogenetic Trees/Animal Genes : TreeFamTTLL7
HOVERGENQ6ZT98
HOGENOMQ6ZT98
Homologs : HomoloGeneTTLL7
Homology/Alignments : Family Browser (UCSC)TTLL7
Gene fusions - Rearrangements
Fusion: TCGATTLL7 TERT
Fusion: TCGATTLL7 SAMD13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL7
dbVarTTLL7
ClinVarTTLL7
1000_GenomesTTLL7 
Exome Variant ServerTTLL7
ExAC (Exome Aggregation Consortium)TTLL7 (select the gene name)
Genetic variants : HAPMAP79739
Genomic Variants (DGV)TTLL7 [DGVbeta]
DECIPHER (Syndromes)1:84335057-84464833  ENSG00000137941
CONAN: Copy Number AnalysisTTLL7 
Mutations
ICGC Data PortalTTLL7 
TCGA Data PortalTTLL7 
Broad Tumor PortalTTLL7
OASIS PortalTTLL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL7
DgiDB (Drug Gene Interaction Database)TTLL7
DoCM (Curated mutations)TTLL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL7 (select a term)
intoGenTTLL7
Cancer3DTTLL7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL7
Genetic Testing Registry TTLL7
NextProtQ6ZT98 [Medical]
TSGene79739
GENETestsTTLL7
Huge Navigator TTLL7 [HugePedia]
snp3D : Map Gene to Disease79739
BioCentury BCIQTTLL7
ClinGenTTLL7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79739
Chemical/Pharm GKB GenePA142670678
Clinical trialTTLL7
Miscellaneous
canSAR (ICR)TTLL7 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL7
EVEXTTLL7
GoPubMedTTLL7
iHOPTTLL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:15 CET 2017

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