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TTLL9 (tubulin tyrosine ligase like 9)

Identity

Alias_namesC20orf125
chromosome 20 open reading frame 125
tubulin tyrosine ligase-like family member 9
Alias_symbol (synonym)dJ310O13.1
Other alias
HGNC (Hugo) TTLL9
LocusID (NCBI) 164395
Atlas_Id 53773
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 30458505 and ends at 30530858 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TTLL9 (20q11.21) / CTNNB1 (3p22.1)ZNF341 (20q11.22) / TTLL9 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTLL9   16118
Cards
Entrez_Gene (NCBI)TTLL9  164395  tubulin tyrosine ligase like 9
AliasesC20orf125
GeneCards (Weizmann)TTLL9
Ensembl hg19 (Hinxton)ENSG00000131044 [Gene_View]  chr20:30458505-30530858 [Contig_View]  TTLL9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131044 [Gene_View]  chr20:30458505-30530858 [Contig_View]  TTLL9 [Vega]
ICGC DataPortalENSG00000131044
TCGA cBioPortalTTLL9
AceView (NCBI)TTLL9
Genatlas (Paris)TTLL9
WikiGenes164395
SOURCE (Princeton)TTLL9
Genetics Home Reference (NIH)TTLL9
Genomic and cartography
GoldenPath hg19 (UCSC)TTLL9  -     chr20:30458505-30530858 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTLL9  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblTTLL9 - 20q11.21 [CytoView hg19]  TTLL9 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBITTLL9 [Mapview hg19]  TTLL9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090839 AK093491 AK123328 AK302360 AK302806
RefSeq transcript (Entrez)NM_001008409
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)TTLL9
Cluster EST : UnigeneHs.712915 [ NCBI ]
CGAP (NCI)Hs.712915
Alternative Splicing GalleryENSG00000131044
Gene ExpressionTTLL9 [ NCBI-GEO ]   TTLL9 [ EBI - ARRAY_EXPRESS ]   TTLL9 [ SEEK ]   TTLL9 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164395
GTEX Portal (Tissue expression)TTLL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXZ7
Splice isoforms : SwissVarQ3SXZ7
Catalytic activity : Enzyme6.-.-.- [ Enzyme-Expasy ]   6.-.-.-6.-.-.- [ IntEnz-EBI ]   6.-.-.- [ BRENDA ]   6.-.-.- [ KEGG ]   
PhosPhoSitePlusQ3SXZ7
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)TTL/TTLL_fam    TTLL9   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL9
DMDM Disease mutations164395
Blocks (Seattle)TTLL9
SuperfamilyQ3SXZ7
Human Protein AtlasENSG00000131044
Peptide AtlasQ3SXZ7
HPRD16638
IPIIPI00478718   IPI00651762   IPI00651746   IPI00889712   IPI00909292   IPI01014326   IPI00908731   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXZ7
IntAct (EBI)Q3SXZ7
FunCoupENSG00000131044
BioGRIDTTLL9
STRING (EMBL)TTLL9
ZODIACTTLL9
Ontologies - Pathways
QuickGOQ3SXZ7
Ontology : AmiGOATP binding  cytoplasm  microtubule  cilium  cellular protein modification process  ligase activity  
Ontology : EGO-EBIATP binding  cytoplasm  microtubule  cilium  cellular protein modification process  ligase activity  
NDEx NetworkTTLL9
Atlas of Cancer Signalling NetworkTTLL9
Wikipedia pathwaysTTLL9
Orthology - Evolution
OrthoDB164395
GeneTree (enSembl)ENSG00000131044
Phylogenetic Trees/Animal Genes : TreeFamTTLL9
HOVERGENQ3SXZ7
HOGENOMQ3SXZ7
Homologs : HomoloGeneTTLL9
Homology/Alignments : Family Browser (UCSC)TTLL9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL9
dbVarTTLL9
ClinVarTTLL9
1000_GenomesTTLL9 
Exome Variant ServerTTLL9
ExAC (Exome Aggregation Consortium)TTLL9 (select the gene name)
Genetic variants : HAPMAP164395
Genomic Variants (DGV)TTLL9 [DGVbeta]
DECIPHER (Syndromes)20:30458505-30530858  ENSG00000131044
CONAN: Copy Number AnalysisTTLL9 
Mutations
ICGC Data PortalTTLL9 
TCGA Data PortalTTLL9 
Broad Tumor PortalTTLL9
OASIS PortalTTLL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTLL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTLL9
DgiDB (Drug Gene Interaction Database)TTLL9
DoCM (Curated mutations)TTLL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL9 (select a term)
intoGenTTLL9
Cancer3DTTLL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTLL9
Genetic Testing Registry TTLL9
NextProtQ3SXZ7 [Medical]
TSGene164395
GENETestsTTLL9
Huge Navigator TTLL9 [HugePedia]
snp3D : Map Gene to Disease164395
BioCentury BCIQTTLL9
ClinGenTTLL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD164395
Chemical/Pharm GKB GenePA25666
Clinical trialTTLL9
Miscellaneous
canSAR (ICR)TTLL9 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL9
EVEXTTLL9
GoPubMedTTLL9
iHOPTTLL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:48 CEST 2017

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