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TTLL9 (tubulin tyrosine ligase like 9)

Identity

Alias (NCBI)C20orf125
HGNC (Hugo) TTLL9
HGNC Alias symbdJ310O13.1
HGNC Previous nameC20orf125
HGNC Previous namechromosome 20 open reading frame 125
 tubulin tyrosine ligase-like family member 9
LocusID (NCBI) 164395
Atlas_Id 53773
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31879817 and ends at 31944959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TTLL9 (20q11.21) / CTNNB1 (3p22.1)ZNF341 (20q11.22) / TTLL9 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(20;20)(q11;q11) BCL2L1/TTLL9


External links

 

Nomenclature
HGNC (Hugo)TTLL9   16118
Cards
Entrez_Gene (NCBI)TTLL9    tubulin tyrosine ligase like 9
AliasesC20orf125
GeneCards (Weizmann)TTLL9
Ensembl hg19 (Hinxton)ENSG00000131044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131044 [Gene_View]  ENSG00000131044 [Sequence]  chr20:31879817-31944959 [Contig_View]  TTLL9 [Vega]
ICGC DataPortalENSG00000131044
TCGA cBioPortalTTLL9
AceView (NCBI)TTLL9
Genatlas (Paris)TTLL9
SOURCE (Princeton)TTLL9
Genetics Home Reference (NIH)TTLL9
Genomic and cartography
GoldenPath hg38 (UCSC)TTLL9  -     chr20:31879817-31944959 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTLL9  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathTTLL9 - 20q11.21 [CytoView hg19]  TTLL9 - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000131044
Genome Data Viewer NCBITTLL9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK090839 AK093491 AK123328 AK302360 AK302806
RefSeq transcript (Entrez)NM_001008409 NM_001367620
Consensus coding sequences : CCDS (NCBI)TTLL9
Gene ExpressionTTLL9 [ NCBI-GEO ]   TTLL9 [ EBI - ARRAY_EXPRESS ]   TTLL9 [ SEEK ]   TTLL9 [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL9 [ Firebrowse - Broad ]
GenevisibleExpression of TTLL9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)164395
GTEX Portal (Tissue expression)TTLL9
Human Protein AtlasENSG00000131044-TTLL9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXZ7
PhosPhoSitePlusQ3SXZ7
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)ATP_grasp_subdomain_1    TTL/TTLL_fam    TTLL9   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL9
SuperfamilyQ3SXZ7
AlphaFold pdb e-kbQ3SXZ7   
Human Protein Atlas [tissue]ENSG00000131044-TTLL9 [tissue]
HPRD16638
Protein Interaction databases
DIP (DOE-UCLA)Q3SXZ7
IntAct (EBI)Q3SXZ7
BioGRIDTTLL9
STRING (EMBL)TTLL9
ZODIACTTLL9
Ontologies - Pathways
QuickGOQ3SXZ7
Ontology : AmiGOmicrotubule cytoskeleton organization  ATP binding  cytoplasm  microtubule  cilium  tubulin binding  protein polyglutamylation  flagellated sperm motility  ciliary basal body  tubulin-glutamic acid ligase activity  
Ontology : EGO-EBImicrotubule cytoskeleton organization  ATP binding  cytoplasm  microtubule  cilium  tubulin binding  protein polyglutamylation  flagellated sperm motility  ciliary basal body  tubulin-glutamic acid ligase activity  
NDEx NetworkTTLL9
Atlas of Cancer Signalling NetworkTTLL9
Wikipedia pathwaysTTLL9
Orthology - Evolution
OrthoDB164395
GeneTree (enSembl)ENSG00000131044
Phylogenetic Trees/Animal Genes : TreeFamTTLL9
Homologs : HomoloGeneTTLL9
Homology/Alignments : Family Browser (UCSC)TTLL9
Gene fusions - Rearrangements
Fusion : QuiverTTLL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL9
dbVarTTLL9
ClinVarTTLL9
MonarchTTLL9
1000_GenomesTTLL9 
Exome Variant ServerTTLL9
GNOMAD BrowserENSG00000131044
Varsome BrowserTTLL9
ACMGTTLL9 variants
VarityQ3SXZ7
Genomic Variants (DGV)TTLL9 [DGVbeta]
DECIPHERTTLL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTLL9 
Mutations
ICGC Data PortalTTLL9 
TCGA Data PortalTTLL9 
Broad Tumor PortalTTLL9
OASIS PortalTTLL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTLL9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTLL9
Mutations and Diseases : HGMDTTLL9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTLL9
DgiDB (Drug Gene Interaction Database)TTLL9
DoCM (Curated mutations)TTLL9
CIViC (Clinical Interpretations of Variants in Cancer)TTLL9
Cancer3DTTLL9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTLL9
MedgenTTLL9
Genetic Testing Registry TTLL9
NextProtQ3SXZ7 [Medical]
GENETestsTTLL9
Target ValidationTTLL9
Huge Navigator TTLL9 [HugePedia]
ClinGenTTLL9
Clinical trials, drugs, therapy
MyCancerGenomeTTLL9
Protein Interactions : CTDTTLL9
Pharm GKB GenePA25666
PharosQ3SXZ7
Clinical trialTTLL9
Miscellaneous
canSAR (ICR)TTLL9
HarmonizomeTTLL9
DataMed IndexTTLL9
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTLL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:46 CEST 2021

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