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TTPAL (alpha tocopherol transfer protein like)

Identity

Alias_namesC20orf121
chromosome 20 open reading frame 121
tocopherol (alpha) transfer protein-like
Alias_symbol (synonym)dJ179M20.3
Other alias
HGNC (Hugo) TTPAL
LocusID (NCBI) 79183
Atlas_Id 75320
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 44475886 and ends at 44494603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTPAL   16114
Cards
Entrez_Gene (NCBI)TTPAL  79183  alpha tocopherol transfer protein like
AliasesC20orf121
GeneCards (Weizmann)TTPAL
Ensembl hg19 (Hinxton)ENSG00000124120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124120 [Gene_View]  chr20:44475886-44494603 [Contig_View]  TTPAL [Vega]
ICGC DataPortalENSG00000124120
TCGA cBioPortalTTPAL
AceView (NCBI)TTPAL
Genatlas (Paris)TTPAL
WikiGenes79183
SOURCE (Princeton)TTPAL
Genetics Home Reference (NIH)TTPAL
Genomic and cartography
GoldenPath hg38 (UCSC)TTPAL  -     chr20:44475886-44494603 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTPAL  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblTTPAL - 20q13.12 [CytoView hg19]  TTPAL - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBITTPAL [Mapview hg19]  TTPAL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056178 AK125126 AK307236 AK314045 BC003071
RefSeq transcript (Entrez)NM_001039199 NM_001261839 NM_024331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTPAL
Cluster EST : UnigeneHs.283869 [ NCBI ]
CGAP (NCI)Hs.283869
Alternative Splicing GalleryENSG00000124120
Gene ExpressionTTPAL [ NCBI-GEO ]   TTPAL [ EBI - ARRAY_EXPRESS ]   TTPAL [ SEEK ]   TTPAL [ MEM ]
Gene Expression Viewer (FireBrowse)TTPAL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79183
GTEX Portal (Tissue expression)TTPAL
Human Protein AtlasENSG00000124120-TTPAL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTX7
Splice isoforms : SwissVarQ9BTX7
PhosPhoSitePlusQ9BTX7
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)   
Domains : Interpro (EBI)CRAL-bd_toc_tran    CRAL-TRIO_dom    CRAL/TRIO_N_dom   
Domain families : Pfam (Sanger)CRAL_TRIO (PF00650)    CRAL_TRIO_N (PF03765)   
Domain families : Pfam (NCBI)pfam00650    pfam03765   
Domain families : Smart (EMBL)CRAL_TRIO_N (SM01100)  SEC14 (SM00516)  
Conserved Domain (NCBI)TTPAL
DMDM Disease mutations79183
Blocks (Seattle)TTPAL
SuperfamilyQ9BTX7
Human Protein Atlas [tissue]ENSG00000124120-TTPAL [tissue]
Peptide AtlasQ9BTX7
HPRD09837
IPIIPI00013624   IPI00982742   IPI00513894   IPI00853416   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTX7
IntAct (EBI)Q9BTX7
FunCoupENSG00000124120
BioGRIDTTPAL
STRING (EMBL)TTPAL
ZODIACTTPAL
Ontologies - Pathways
QuickGOQ9BTX7
Ontology : AmiGOtransporter activity  intracellular  transport  membrane  
Ontology : EGO-EBItransporter activity  intracellular  transport  membrane  
NDEx NetworkTTPAL
Atlas of Cancer Signalling NetworkTTPAL
Wikipedia pathwaysTTPAL
Orthology - Evolution
OrthoDB79183
GeneTree (enSembl)ENSG00000124120
Phylogenetic Trees/Animal Genes : TreeFamTTPAL
HOVERGENQ9BTX7
HOGENOMQ9BTX7
Homologs : HomoloGeneTTPAL
Homology/Alignments : Family Browser (UCSC)TTPAL
Gene fusions - Rearrangements
Tumor Fusion PortalTTPAL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTPAL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTPAL
dbVarTTPAL
ClinVarTTPAL
1000_GenomesTTPAL 
Exome Variant ServerTTPAL
ExAC (Exome Aggregation Consortium)ENSG00000124120
GNOMAD BrowserENSG00000124120
Genetic variants : HAPMAP79183
Genomic Variants (DGV)TTPAL [DGVbeta]
DECIPHERTTPAL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTPAL 
Mutations
ICGC Data PortalTTPAL 
TCGA Data PortalTTPAL 
Broad Tumor PortalTTPAL
OASIS PortalTTPAL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTPAL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTPAL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTPAL
DgiDB (Drug Gene Interaction Database)TTPAL
DoCM (Curated mutations)TTPAL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTPAL (select a term)
intoGenTTPAL
Cancer3DTTPAL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTPAL
MedgenTTPAL
Genetic Testing Registry TTPAL
NextProtQ9BTX7 [Medical]
TSGene79183
GENETestsTTPAL
Target ValidationTTPAL
Huge Navigator TTPAL [HugePedia]
snp3D : Map Gene to Disease79183
BioCentury BCIQTTPAL
ClinGenTTPAL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79183
Chemical/Pharm GKB GenePA162407296
Clinical trialTTPAL
Miscellaneous
canSAR (ICR)TTPAL (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTPAL
EVEXTTPAL
GoPubMedTTPAL
iHOPTTPAL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:42:25 CET 2017

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