Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTTY10 (testis-specific transcript, Y-linked 10 (non-protein coding))

Identity

Alias_namestestis-specific transcript, Y-linked 10
Alias_symbol (synonym)NCRNA00133
Other aliasTTY10
HGNC (Hugo) TTTY10
LocusID (NCBI) 246119
Atlas_Id 75322
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 20465668 and ends at 20519228 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY10   18491
Cards
Entrez_Gene (NCBI)TTTY10  246119  testis-specific transcript, Y-linked 10 (non-protein coding)
AliasesNCRNA00133; TTY10
GeneCards (Weizmann)TTTY10
Ensembl hg19 (Hinxton)ENSG00000229236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229236 [Gene_View]  chrY:20465668-20519228 [Contig_View]  TTTY10 [Vega]
ICGC DataPortalENSG00000229236
TCGA cBioPortalTTTY10
AceView (NCBI)TTTY10
Genatlas (Paris)TTTY10
WikiGenes246119
SOURCE (Princeton)TTTY10
Genetics Home Reference (NIH)TTTY10
Genomic and cartography
GoldenPath hg38 (UCSC)TTTY10  -     chrY:20465668-20519228 -  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTTY10  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblTTTY10 - Yq11.223 [CytoView hg19]  TTTY10 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBITTTY10 [Mapview hg19]  TTTY10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTTY10
Cluster EST : UnigeneHs.461175 [ NCBI ]
CGAP (NCI)Hs.461175
Alternative Splicing GalleryENSG00000229236
Gene ExpressionTTTY10 [ NCBI-GEO ]   TTTY10 [ EBI - ARRAY_EXPRESS ]   TTTY10 [ SEEK ]   TTTY10 [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246119
GTEX Portal (Tissue expression)TTTY10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZA0
Splice isoforms : SwissVarQ9BZA0
PhosPhoSitePlusQ9BZA0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY10
DMDM Disease mutations246119
Blocks (Seattle)TTTY10
SuperfamilyQ9BZA0
Human Protein AtlasENSG00000229236
Peptide AtlasQ9BZA0
IPIIPI00011146   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZA0
IntAct (EBI)Q9BZA0
FunCoupENSG00000229236
BioGRIDTTTY10
STRING (EMBL)TTTY10
ZODIACTTTY10
Ontologies - Pathways
QuickGOQ9BZA0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTTY10
Atlas of Cancer Signalling NetworkTTTY10
Wikipedia pathwaysTTTY10
Orthology - Evolution
OrthoDB246119
GeneTree (enSembl)ENSG00000229236
Phylogenetic Trees/Animal Genes : TreeFamTTTY10
HOVERGENQ9BZA0
HOGENOMQ9BZA0
Homologs : HomoloGeneTTTY10
Homology/Alignments : Family Browser (UCSC)TTTY10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTTY10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTTY10
dbVarTTTY10
ClinVarTTTY10
1000_GenomesTTTY10 
Exome Variant ServerTTTY10
ExAC (Exome Aggregation Consortium)TTTY10 (select the gene name)
Genetic variants : HAPMAP246119
Genomic Variants (DGV)TTTY10 [DGVbeta]
DECIPHERTTTY10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTTY10 
Mutations
ICGC Data PortalTTTY10 
TCGA Data PortalTTTY10 
Broad Tumor PortalTTTY10
OASIS PortalTTTY10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTTY10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTTY10
DgiDB (Drug Gene Interaction Database)TTTY10
DoCM (Curated mutations)TTTY10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTTY10 (select a term)
intoGenTTTY10
Cancer3DTTTY10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTTY10
Genetic Testing Registry TTTY10
NextProtQ9BZA0 [Medical]
TSGene246119
GENETestsTTTY10
Target ValidationTTTY10
Huge Navigator TTTY10 [HugePedia]
snp3D : Map Gene to Disease246119
BioCentury BCIQTTTY10
ClinGenTTTY10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246119
Chemical/Pharm GKB GenePA38554
Clinical trialTTTY10
Miscellaneous
canSAR (ICR)TTTY10 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY10
EVEXTTTY10
GoPubMedTTTY10
iHOPTTTY10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.