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TTTY12 (testis-specific transcript, Y-linked 12 (non-protein coding))

Identity

Alias_namestestis-specific transcript, Y-linked 12
Alias_symbol (synonym)TTY11
NCRNA00135
Other aliasTTY12
HGNC (Hugo) TTTY12
LocusID (NCBI) 83867
Atlas_Id 75324
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 7672965 and ends at 7678723 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY12   18493
Cards
Entrez_Gene (NCBI)TTTY12  83867  testis-specific transcript, Y-linked 12 (non-protein coding)
AliasesNCRNA00135; TTY11; TTY12
GeneCards (Weizmann)TTTY12
Ensembl hg19 (Hinxton)ENSG00000237048 [Gene_View]  chrY:7672965-7678723 [Contig_View]  TTTY12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000237048 [Gene_View]  chrY:7672965-7678723 [Contig_View]  TTTY12 [Vega]
ICGC DataPortalENSG00000237048
TCGA cBioPortalTTTY12
AceView (NCBI)TTTY12
Genatlas (Paris)TTTY12
WikiGenes83867
SOURCE (Princeton)TTTY12
Genetics Home Reference (NIH)TTTY12
Genomic and cartography
GoldenPath hg19 (UCSC)TTTY12  -     chrY:7672965-7678723 +  Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTTY12  -     Yp11.2   [Description]    (hg38-Dec_2013)
EnsemblTTTY12 - Yp11.2 [CytoView hg19]  TTTY12 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITTTY12 [Mapview hg19]  TTTY12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)HG512821
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000024 NT_011896
Consensus coding sequences : CCDS (NCBI)TTTY12
Cluster EST : UnigeneHs.667616 [ NCBI ]
CGAP (NCI)Hs.667616
Alternative Splicing GalleryENSG00000237048
Gene ExpressionTTTY12 [ NCBI-GEO ]   TTTY12 [ EBI - ARRAY_EXPRESS ]   TTTY12 [ SEEK ]   TTTY12 [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83867
GTEX Portal (Tissue expression)TTTY12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ98
Splice isoforms : SwissVarQ9BZ98
PhosPhoSitePlusQ9BZ98
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY12
DMDM Disease mutations83867
Blocks (Seattle)TTTY12
SuperfamilyQ9BZ98
Human Protein AtlasENSG00000237048
Peptide AtlasQ9BZ98
IPIIPI00011148   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ98
IntAct (EBI)Q9BZ98
FunCoupENSG00000237048
BioGRIDTTTY12
STRING (EMBL)TTTY12
ZODIACTTTY12
Ontologies - Pathways
QuickGOQ9BZ98
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTTY12
Atlas of Cancer Signalling NetworkTTTY12
Wikipedia pathwaysTTTY12
Orthology - Evolution
OrthoDB83867
GeneTree (enSembl)ENSG00000237048
Phylogenetic Trees/Animal Genes : TreeFamTTTY12
HOVERGENQ9BZ98
HOGENOMQ9BZ98
Homologs : HomoloGeneTTTY12
Homology/Alignments : Family Browser (UCSC)TTTY12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTTY12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTTY12
dbVarTTTY12
ClinVarTTTY12
1000_GenomesTTTY12 
Exome Variant ServerTTTY12
ExAC (Exome Aggregation Consortium)TTTY12 (select the gene name)
Genetic variants : HAPMAP83867
Genomic Variants (DGV)TTTY12 [DGVbeta]
DECIPHER (Syndromes)Y:7672965-7678723  ENSG00000237048
CONAN: Copy Number AnalysisTTTY12 
Mutations
ICGC Data PortalTTTY12 
TCGA Data PortalTTTY12 
Broad Tumor PortalTTTY12
OASIS PortalTTTY12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTTY12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTTY12
DgiDB (Drug Gene Interaction Database)TTTY12
DoCM (Curated mutations)TTTY12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTTY12 (select a term)
intoGenTTTY12
Cancer3DTTTY12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTTY12
Genetic Testing Registry TTTY12
NextProtQ9BZ98 [Medical]
TSGene83867
GENETestsTTTY12
Huge Navigator TTTY12 [HugePedia]
snp3D : Map Gene to Disease83867
BioCentury BCIQTTTY12
ClinGenTTTY12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83867
Chemical/Pharm GKB GenePA38556
Clinical trialTTTY12
Miscellaneous
canSAR (ICR)TTTY12 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY12
EVEXTTTY12
GoPubMedTTTY12
iHOPTTTY12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:17 CET 2017

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