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TTTY13 (testis-specific transcript, Y-linked 13 (non-protein coding))

Identity

Alias_namestestis-specific transcript, Y-linked 13
Alias_symbol (synonym)TTY13
NCRNA00136
Other alias
HGNC (Hugo) TTTY13
LocusID (NCBI) 83868
Atlas_Id 75325
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 21583600 and ends at 21594666 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY13   18494
Cards
Entrez_Gene (NCBI)TTTY13  83868  testis-specific transcript, Y-linked 13 (non-protein coding)
AliasesNCRNA00136; TTY13
GeneCards (Weizmann)TTTY13
Ensembl hg19 (Hinxton)ENSG00000184991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184991 [Gene_View]  chrY:21583600-21594666 [Contig_View]  TTTY13 [Vega]
ICGC DataPortalENSG00000184991
TCGA cBioPortalTTTY13
AceView (NCBI)TTTY13
Genatlas (Paris)TTTY13
WikiGenes83868
SOURCE (Princeton)TTTY13
Genetics Home Reference (NIH)TTTY13
Genomic and cartography
GoldenPath hg38 (UCSC)TTTY13  -     chrY:21583600-21594666 -  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTTY13  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblTTTY13 - Yq11.223 [CytoView hg19]  TTTY13 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBITTTY13 [Mapview hg19]  TTTY13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTTY13
Cluster EST : UnigeneHs.615432 [ NCBI ]
CGAP (NCI)Hs.615432
Alternative Splicing GalleryENSG00000184991
Gene ExpressionTTTY13 [ NCBI-GEO ]   TTTY13 [ EBI - ARRAY_EXPRESS ]   TTTY13 [ SEEK ]   TTTY13 [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83868
GTEX Portal (Tissue expression)TTTY13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ97
Splice isoforms : SwissVarQ9BZ97
PhosPhoSitePlusQ9BZ97
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY13
DMDM Disease mutations83868
Blocks (Seattle)TTTY13
SuperfamilyQ9BZ97
Human Protein AtlasENSG00000184991
Peptide AtlasQ9BZ97
IPIIPI00011150   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ97
IntAct (EBI)Q9BZ97
FunCoupENSG00000184991
BioGRIDTTTY13
STRING (EMBL)TTTY13
ZODIACTTTY13
Ontologies - Pathways
QuickGOQ9BZ97
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTTY13
Atlas of Cancer Signalling NetworkTTTY13
Wikipedia pathwaysTTTY13
Orthology - Evolution
OrthoDB83868
GeneTree (enSembl)ENSG00000184991
Phylogenetic Trees/Animal Genes : TreeFamTTTY13
HOVERGENQ9BZ97
HOGENOMQ9BZ97
Homologs : HomoloGeneTTTY13
Homology/Alignments : Family Browser (UCSC)TTTY13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTTY13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTTY13
dbVarTTTY13
ClinVarTTTY13
1000_GenomesTTTY13 
Exome Variant ServerTTTY13
ExAC (Exome Aggregation Consortium)TTTY13 (select the gene name)
Genetic variants : HAPMAP83868
Genomic Variants (DGV)TTTY13 [DGVbeta]
DECIPHERTTTY13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTTY13 
Mutations
ICGC Data PortalTTTY13 
TCGA Data PortalTTTY13 
Broad Tumor PortalTTTY13
OASIS PortalTTTY13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTTY13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTTY13
DgiDB (Drug Gene Interaction Database)TTTY13
DoCM (Curated mutations)TTTY13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTTY13 (select a term)
intoGenTTTY13
Cancer3DTTTY13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTTY13
Genetic Testing Registry TTTY13
NextProtQ9BZ97 [Medical]
TSGene83868
GENETestsTTTY13
Target ValidationTTTY13
Huge Navigator TTTY13 [HugePedia]
snp3D : Map Gene to Disease83868
BioCentury BCIQTTTY13
ClinGenTTTY13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83868
Chemical/Pharm GKB GenePA38557
Clinical trialTTTY13
Miscellaneous
canSAR (ICR)TTTY13 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY13
EVEXTTTY13
GoPubMedTTTY13
iHOPTTTY13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:55 CEST 2017

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