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TTTY16 (testis-specific transcript, Y-linked 16 (non-protein coding))

Identity

Alias_namestestis-specific transcript, Y-linked 16
Alias_symbol (synonym)NCRNA00139
Other alias
HGNC (Hugo) TTTY16
LocusID (NCBI) 252948
Atlas_Id 75327
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 7699357 and ends at 7701247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY16   18840
Cards
Entrez_Gene (NCBI)TTTY16  252948  testis-specific transcript, Y-linked 16 (non-protein coding)
AliasesNCRNA00139
GeneCards (Weizmann)TTTY16
Ensembl hg19 (Hinxton)ENSG00000225520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225520 [Gene_View]  chrY:7699357-7701247 [Contig_View]  TTTY16 [Vega]
ICGC DataPortalENSG00000225520
TCGA cBioPortalTTTY16
AceView (NCBI)TTTY16
Genatlas (Paris)TTTY16
WikiGenes252948
SOURCE (Princeton)TTTY16
Genetics Home Reference (NIH)TTTY16
Genomic and cartography
GoldenPath hg38 (UCSC)TTTY16  -     chrY:7699357-7701247 -  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTTY16  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTTTY16 - Yp11.2 [CytoView hg19]  TTTY16 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITTTY16 [Mapview hg19]  TTTY16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF527828
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTTY16
Cluster EST : UnigeneHs.522848 [ NCBI ]
CGAP (NCI)Hs.522848
Alternative Splicing GalleryENSG00000225520
Gene ExpressionTTTY16 [ NCBI-GEO ]   TTTY16 [ EBI - ARRAY_EXPRESS ]   TTTY16 [ SEEK ]   TTTY16 [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)252948
GTEX Portal (Tissue expression)TTTY16
Human Protein AtlasENSG00000225520-TTTY16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY16
DMDM Disease mutations252948
Blocks (Seattle)TTTY16
Human Protein Atlas [tissue]ENSG00000225520-TTTY16 [tissue]
Protein Interaction databases
FunCoupENSG00000225520
BioGRIDTTTY16
STRING (EMBL)TTTY16
ZODIACTTTY16
Ontologies - Pathways
Huge Navigator TTTY16 [HugePedia]
snp3D : Map Gene to Disease252948
BioCentury BCIQTTTY16
ClinGenTTTY16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD252948
Chemical/Pharm GKB GenePA38703
Clinical trialTTTY16
Miscellaneous
canSAR (ICR)TTTY16 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY16
EVEXTTTY16
GoPubMedTTTY16
iHOPTTTY16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:14 CET 2017

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