Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTTY6B (testis-specific transcript, Y-linked 6B (non-protein coding))

Identity

Alias_namestestis-specific transcript, Y-linked 6B
Alias_symbol (synonym)LINC00128
Other aliasNCRNA00128
TTTY6
TTY6
HGNC (Hugo) TTTY6B
LocusID (NCBI) 441543
Atlas_Id 75349
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22144987 and ends at 22146834 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY6B   31887
Cards
Entrez_Gene (NCBI)TTTY6B  441543  testis-specific transcript, Y-linked 6B (non-protein coding)
AliasesLINC00128; NCRNA00128; TTTY6; TTY6
GeneCards (Weizmann)TTTY6B
Ensembl hg19 (Hinxton)ENSG00000131548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131548 [Gene_View]  chrY:22144987-22146834 [Contig_View]  TTTY6B [Vega]
ICGC DataPortalENSG00000131548
TCGA cBioPortalTTTY6B
AceView (NCBI)TTTY6B
Genatlas (Paris)TTTY6B
WikiGenes441543
SOURCE (Princeton)TTTY6B
Genetics Home Reference (NIH)TTTY6B
Genomic and cartography
GoldenPath hg38 (UCSC)TTTY6B  -     chrY:22144987-22146834 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTTY6B  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblTTTY6B - Yq11.223 [CytoView hg19]  TTTY6B - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBITTTY6B [Mapview hg19]  TTTY6B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA884105 AY597808
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTTY6B
Cluster EST : UnigeneHs.722660 [ NCBI ]
CGAP (NCI)Hs.722660
Alternative Splicing GalleryENSG00000131548
Gene ExpressionTTTY6B [ NCBI-GEO ]   TTTY6B [ EBI - ARRAY_EXPRESS ]   TTTY6B [ SEEK ]   TTTY6B [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)441543
GTEX Portal (Tissue expression)TTTY6B
Human Protein AtlasENSG00000131548-TTTY6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY6B
DMDM Disease mutations441543
Blocks (Seattle)TTTY6B
Human Protein Atlas [tissue]ENSG00000131548-TTTY6B [tissue]
Protein Interaction databases
FunCoupENSG00000131548
BioGRIDTTTY6B
STRING (EMBL)TTTY6B
ZODIACTTTY6B
Ontologies - Pathways
Huge Navigator TTTY6B [HugePedia]
snp3D : Map Gene to Disease441543
BioCentury BCIQTTTY6B
ClinGenTTTY6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441543
Chemical/Pharm GKB GenePA134872370
Clinical trialTTTY6B
Miscellaneous
canSAR (ICR)TTTY6B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY6B
EVEXTTTY6B
GoPubMedTTTY6B
iHOPTTTY6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:18 CET 2017

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