Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTYH1 (tweety family member 1)

Identity

Alias_namestweety (Drosophila) homolog 1
tweety homolog 1 (Drosophila)
Other alias-
HGNC (Hugo) TTYH1
LocusID (NCBI) 57348
Atlas_Id 53832
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54415431 and ends at 54436719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CNTN5 (11q22.1) / TTYH1 (19q13.42)NRXN1 (2p16.3) / TTYH1 (19q13.42)CNTN5 11q22.1 / TTYH1 19q13.42

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTYH1   13476
Cards
Entrez_Gene (NCBI)TTYH1  57348  tweety family member 1
Aliases
GeneCards (Weizmann)TTYH1
Ensembl hg19 (Hinxton)ENSG00000167614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167614 [Gene_View]  chr19:54415431-54436719 [Contig_View]  TTYH1 [Vega]
ICGC DataPortalENSG00000167614
TCGA cBioPortalTTYH1
AceView (NCBI)TTYH1
Genatlas (Paris)TTYH1
WikiGenes57348
SOURCE (Princeton)TTYH1
Genetics Home Reference (NIH)TTYH1
Genomic and cartography
GoldenPath hg38 (UCSC)TTYH1  -     chr19:54415431-54436719 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTYH1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblTTYH1 - 19q13.42 [CytoView hg19]  TTYH1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBITTYH1 [Mapview hg19]  TTYH1 [Mapview hg38]
OMIM605784   
Gene and transcription
Genbank (Entrez)AB162930 AB188496 AF177909 AK126690 AK289468
RefSeq transcript (Entrez)NM_001005367 NM_001201461 NM_020659
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571060
Consensus coding sequences : CCDS (NCBI)TTYH1
Cluster EST : UnigeneHs.268728 [ NCBI ]
CGAP (NCI)Hs.268728
Alternative Splicing GalleryENSG00000167614
Gene ExpressionTTYH1 [ NCBI-GEO ]   TTYH1 [ EBI - ARRAY_EXPRESS ]   TTYH1 [ SEEK ]   TTYH1 [ MEM ]
Gene Expression Viewer (FireBrowse)TTYH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57348
GTEX Portal (Tissue expression)TTYH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H313   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H313  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H313
Splice isoforms : SwissVarQ9H313
PhosPhoSitePlusQ9H313
Domains : Interpro (EBI)Tweety   
Domain families : Pfam (Sanger)Tweety (PF04906)   
Domain families : Pfam (NCBI)pfam04906   
Conserved Domain (NCBI)TTYH1
DMDM Disease mutations57348
Blocks (Seattle)TTYH1
SuperfamilyQ9H313
Human Protein AtlasENSG00000167614
Peptide AtlasQ9H313
HPRD12043
IPIIPI00657972   IPI00010183   IPI00437697   IPI00647719   IPI00746039   IPI00657895   IPI00795810   IPI00878097   IPI00893716   IPI00893818   
Protein Interaction databases
DIP (DOE-UCLA)Q9H313
IntAct (EBI)Q9H313
FunCoupENSG00000167614
BioGRIDTTYH1
STRING (EMBL)TTYH1
ZODIACTTYH1
Ontologies - Pathways
QuickGOQ9H313
Ontology : AmiGOchloride channel activity  iron ion transmembrane transporter activity  calcium ion binding  plasma membrane  chloride transport  iron ion transport  integral component of membrane  single organismal cell-cell adhesion  smooth endoplasmic reticulum membrane  filopodium membrane  cell-substrate adhesion  filopodium tip  ion transmembrane transport  chloride channel complex  iron ion transmembrane transport  regulation of anion transport  filopodium assembly  volume-sensitive chloride channel activity  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  iron ion transmembrane transporter activity  calcium ion binding  plasma membrane  chloride transport  iron ion transport  integral component of membrane  single organismal cell-cell adhesion  smooth endoplasmic reticulum membrane  filopodium membrane  cell-substrate adhesion  filopodium tip  ion transmembrane transport  chloride channel complex  iron ion transmembrane transport  regulation of anion transport  filopodium assembly  volume-sensitive chloride channel activity  chloride transmembrane transport  
NDEx NetworkTTYH1
Atlas of Cancer Signalling NetworkTTYH1
Wikipedia pathwaysTTYH1
Orthology - Evolution
OrthoDB57348
GeneTree (enSembl)ENSG00000167614
Phylogenetic Trees/Animal Genes : TreeFamTTYH1
HOVERGENQ9H313
HOGENOMQ9H313
Homologs : HomoloGeneTTYH1
Homology/Alignments : Family Browser (UCSC)TTYH1
Gene fusions - Rearrangements
Fusion : MitelmanCNTN5/TTYH1 [11q22.1/19q13.42]  [t(11;19)(q22;q13)]  
Fusion: TCGACNTN5 11q22.1 TTYH1 19q13.42 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTYH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTYH1
dbVarTTYH1
ClinVarTTYH1
1000_GenomesTTYH1 
Exome Variant ServerTTYH1
ExAC (Exome Aggregation Consortium)TTYH1 (select the gene name)
Genetic variants : HAPMAP57348
Genomic Variants (DGV)TTYH1 [DGVbeta]
DECIPHERTTYH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTYH1 
Mutations
ICGC Data PortalTTYH1 
TCGA Data PortalTTYH1 
Broad Tumor PortalTTYH1
OASIS PortalTTYH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTYH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTYH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTYH1
DgiDB (Drug Gene Interaction Database)TTYH1
DoCM (Curated mutations)TTYH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTYH1 (select a term)
intoGenTTYH1
Cancer3DTTYH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605784   
Orphanet
MedgenTTYH1
Genetic Testing Registry TTYH1
NextProtQ9H313 [Medical]
TSGene57348
GENETestsTTYH1
Huge Navigator TTYH1 [HugePedia]
snp3D : Map Gene to Disease57348
BioCentury BCIQTTYH1
ClinGenTTYH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57348
Chemical/Pharm GKB GenePA37778
Clinical trialTTYH1
Miscellaneous
canSAR (ICR)TTYH1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTYH1
EVEXTTYH1
GoPubMedTTYH1
iHOPTTYH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:42:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.