Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTYH3 (tweety family member 3)

Identity

Alias_namestweety homolog 3 (Drosophila)
Alias_symbol (synonym)KIAA1691
Other alias-
HGNC (Hugo) TTYH3
LocusID (NCBI) 80727
Atlas_Id 75356
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2631969 and ends at 2664802 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C7orf50 (7p22.3) / TTYH3 (7p22.3)MAD1L1 (7p22.3) / TTYH3 (7p22.3)TTYH3 (7p22.3) / C7orf50 (7p22.3)
TTYH3 (7p22.3) / ING1 (13q34)TTYH3 (7p22.3) / MAD1L1 (7p22.3)TTYH3 (7p22.3) / NOC4L (12q24.33)
TTYH3 (7p22.3) / SNX22 (15q22.31)TTYH3 (7p22.3) / SPTAN1 (9q34.11)TTYH3 (7p22.3) / TTYH3 (7p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTYH3   22222
Cards
Entrez_Gene (NCBI)TTYH3  80727  tweety family member 3
Aliases
GeneCards (Weizmann)TTYH3
Ensembl hg19 (Hinxton)ENSG00000136295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136295 [Gene_View]  chr7:2631969-2664802 [Contig_View]  TTYH3 [Vega]
ICGC DataPortalENSG00000136295
TCGA cBioPortalTTYH3
AceView (NCBI)TTYH3
Genatlas (Paris)TTYH3
WikiGenes80727
SOURCE (Princeton)TTYH3
Genetics Home Reference (NIH)TTYH3
Genomic and cartography
GoldenPath hg38 (UCSC)TTYH3  -     chr7:2631969-2664802 +  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTYH3  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblTTYH3 - 7p22.3 [CytoView hg19]  TTYH3 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBITTYH3 [Mapview hg19]  TTYH3 [Mapview hg38]
OMIM608919   
Gene and transcription
Genbank (Entrez)AB051478 AB162931 AF318350 AK074158 AK096851
RefSeq transcript (Entrez)NM_025250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTYH3
Cluster EST : UnigeneHs.440899 [ NCBI ]
CGAP (NCI)Hs.440899
Alternative Splicing GalleryENSG00000136295
Gene ExpressionTTYH3 [ NCBI-GEO ]   TTYH3 [ EBI - ARRAY_EXPRESS ]   TTYH3 [ SEEK ]   TTYH3 [ MEM ]
Gene Expression Viewer (FireBrowse)TTYH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80727
GTEX Portal (Tissue expression)TTYH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0H2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0H2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0H2
Splice isoforms : SwissVarQ9C0H2
PhosPhoSitePlusQ9C0H2
Domains : Interpro (EBI)Tweety   
Domain families : Pfam (Sanger)Tweety (PF04906)   
Domain families : Pfam (NCBI)pfam04906   
Conserved Domain (NCBI)TTYH3
DMDM Disease mutations80727
Blocks (Seattle)TTYH3
SuperfamilyQ9C0H2
Human Protein AtlasENSG00000136295
Peptide AtlasQ9C0H2
HPRD12333
IPIIPI00749429   IPI00876857   IPI00877061   IPI00383298   IPI00892752   IPI00894413   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0H2
IntAct (EBI)Q9C0H2
FunCoupENSG00000136295
BioGRIDTTYH3
STRING (EMBL)TTYH3
ZODIACTTYH3
Ontologies - Pathways
QuickGOQ9C0H2
Ontology : AmiGOintracellular calcium activated chloride channel activity  intracellular calcium activated chloride channel activity  chloride channel activity  plasma membrane  plasma membrane  chloride transport  ion transmembrane transport  chloride channel complex  extracellular exosome  chloride transmembrane transport  
Ontology : EGO-EBIintracellular calcium activated chloride channel activity  intracellular calcium activated chloride channel activity  chloride channel activity  plasma membrane  plasma membrane  chloride transport  ion transmembrane transport  chloride channel complex  extracellular exosome  chloride transmembrane transport  
NDEx NetworkTTYH3
Atlas of Cancer Signalling NetworkTTYH3
Wikipedia pathwaysTTYH3
Orthology - Evolution
OrthoDB80727
GeneTree (enSembl)ENSG00000136295
Phylogenetic Trees/Animal Genes : TreeFamTTYH3
HOVERGENQ9C0H2
HOGENOMQ9C0H2
Homologs : HomoloGeneTTYH3
Homology/Alignments : Family Browser (UCSC)TTYH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTYH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTYH3
dbVarTTYH3
ClinVarTTYH3
1000_GenomesTTYH3 
Exome Variant ServerTTYH3
ExAC (Exome Aggregation Consortium)TTYH3 (select the gene name)
Genetic variants : HAPMAP80727
Genomic Variants (DGV)TTYH3 [DGVbeta]
DECIPHERTTYH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTYH3 
Mutations
ICGC Data PortalTTYH3 
TCGA Data PortalTTYH3 
Broad Tumor PortalTTYH3
OASIS PortalTTYH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTYH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTYH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTYH3
DgiDB (Drug Gene Interaction Database)TTYH3
DoCM (Curated mutations)TTYH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTYH3 (select a term)
intoGenTTYH3
Cancer3DTTYH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608919   
Orphanet
MedgenTTYH3
Genetic Testing Registry TTYH3
NextProtQ9C0H2 [Medical]
TSGene80727
GENETestsTTYH3
Target ValidationTTYH3
Huge Navigator TTYH3 [HugePedia]
snp3D : Map Gene to Disease80727
BioCentury BCIQTTYH3
ClinGenTTYH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80727
Chemical/Pharm GKB GenePA134908427
Clinical trialTTYH3
Miscellaneous
canSAR (ICR)TTYH3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTYH3
EVEXTTYH3
GoPubMedTTYH3
iHOPTTYH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.