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TUBA3C (tubulin alpha 3c)

Identity

Alias_namesTUBA2
tubulin, alpha 2
Alias_symbol (synonym)bA408E5.3
Other alias
HGNC (Hugo) TUBA3C
LocusID (NCBI) 7278
Atlas_Id 75358
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 19173770 and ends at 19181852 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBA3C   12408
Cards
Entrez_Gene (NCBI)TUBA3C  7278  tubulin alpha 3c
AliasesTUBA2; bA408E5.3
GeneCards (Weizmann)TUBA3C
Ensembl hg19 (Hinxton)ENSG00000198033 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198033 [Gene_View]  chr13:19173770-19181852 [Contig_View]  TUBA3C [Vega]
ICGC DataPortalENSG00000198033
TCGA cBioPortalTUBA3C
AceView (NCBI)TUBA3C
Genatlas (Paris)TUBA3C
WikiGenes7278
SOURCE (Princeton)TUBA3C
Genetics Home Reference (NIH)TUBA3C
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA3C  -     chr13:19173770-19181852 -  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA3C  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblTUBA3C - 13q12.11 [CytoView hg19]  TUBA3C - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBITUBA3C [Mapview hg19]  TUBA3C [Mapview hg38]
OMIM602528   
Gene and transcription
Genbank (Entrez)AA412719 AY892915 BC011721 DB026664 DB524026
RefSeq transcript (Entrez)NM_006001 NM_079836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBA3C
Cluster EST : UnigeneHs.349695 [ NCBI ]
CGAP (NCI)Hs.349695
Alternative Splicing GalleryENSG00000198033
Gene ExpressionTUBA3C [ NCBI-GEO ]   TUBA3C [ EBI - ARRAY_EXPRESS ]   TUBA3C [ SEEK ]   TUBA3C [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7278
GTEX Portal (Tissue expression)TUBA3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13748   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13748  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13748
Splice isoforms : SwissVarQ13748
PhosPhoSitePlusQ13748
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBA3C
DMDM Disease mutations7278
Blocks (Seattle)TUBA3C
SuperfamilyQ13748
Human Protein AtlasENSG00000198033
Peptide AtlasQ13748
HPRD03958
Protein Interaction databases
DIP (DOE-UCLA)Q13748
IntAct (EBI)Q13748
FunCoupENSG00000198033
BioGRIDTUBA3C
STRING (EMBL)TUBA3C
ZODIACTUBA3C
Ontologies - Pathways
QuickGOQ13748
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Pathways : BIOCARTADownregulated of MTA-3 in ER-negative Breast Tumors [Genes]   
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBA3C
Atlas of Cancer Signalling NetworkTUBA3C
Wikipedia pathwaysTUBA3C
Orthology - Evolution
OrthoDB7278
GeneTree (enSembl)ENSG00000198033
Phylogenetic Trees/Animal Genes : TreeFamTUBA3C
HOVERGENQ13748
HOGENOMQ13748
Homologs : HomoloGeneTUBA3C
Homology/Alignments : Family Browser (UCSC)TUBA3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA3C
dbVarTUBA3C
ClinVarTUBA3C
1000_GenomesTUBA3C 
Exome Variant ServerTUBA3C
ExAC (Exome Aggregation Consortium)TUBA3C (select the gene name)
Genetic variants : HAPMAP7278
Genomic Variants (DGV)TUBA3C [DGVbeta]
DECIPHERTUBA3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA3C 
Mutations
ICGC Data PortalTUBA3C 
TCGA Data PortalTUBA3C 
Broad Tumor PortalTUBA3C
OASIS PortalTUBA3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBA3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBA3C
DgiDB (Drug Gene Interaction Database)TUBA3C
DoCM (Curated mutations)TUBA3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBA3C (select a term)
intoGenTUBA3C
Cancer3DTUBA3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602528   
Orphanet
MedgenTUBA3C
Genetic Testing Registry TUBA3C
NextProtQ13748 [Medical]
TSGene7278
GENETestsTUBA3C
Target ValidationTUBA3C
Huge Navigator TUBA3C [HugePedia]
snp3D : Map Gene to Disease7278
BioCentury BCIQTUBA3C
ClinGenTUBA3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7278
Chemical/Pharm GKB GenePA162407346
Clinical trialTUBA3C
Miscellaneous
canSAR (ICR)TUBA3C (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBA3C
EVEXTUBA3C
GoPubMedTUBA3C
iHOPTUBA3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:47 CEST 2017

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