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TUBA3D (tubulin alpha 3d)

Identity

Alias_symbol (synonym)H2-ALPHA
Other alias
HGNC (Hugo) TUBA3D
LocusID (NCBI) 113457
Atlas_Id 75359
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 131476007 and ends at 131482934 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBA3D   24071
Cards
Entrez_Gene (NCBI)TUBA3D  113457  tubulin alpha 3d
AliasesH2-ALPHA
GeneCards (Weizmann)TUBA3D
Ensembl hg19 (Hinxton)ENSG00000075886 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075886 [Gene_View]  chr2:131476007-131482934 [Contig_View]  TUBA3D [Vega]
ICGC DataPortalENSG00000075886
TCGA cBioPortalTUBA3D
AceView (NCBI)TUBA3D
Genatlas (Paris)TUBA3D
WikiGenes113457
SOURCE (Princeton)TUBA3D
Genetics Home Reference (NIH)TUBA3D
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA3D  -     chr2:131476007-131482934 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA3D  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblTUBA3D - 2q21.1 [CytoView hg19]  TUBA3D - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBITUBA3D [Mapview hg19]  TUBA3D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093116 AK292253 AW966211 BC057810 DB051220
RefSeq transcript (Entrez)NM_080386
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBA3D
Cluster EST : UnigeneHs.503749 [ NCBI ]
CGAP (NCI)Hs.503749
Alternative Splicing GalleryENSG00000075886
Gene ExpressionTUBA3D [ NCBI-GEO ]   TUBA3D [ EBI - ARRAY_EXPRESS ]   TUBA3D [ SEEK ]   TUBA3D [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113457
GTEX Portal (Tissue expression)TUBA3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13748   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13748  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13748
Splice isoforms : SwissVarQ13748
PhosPhoSitePlusQ13748
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBA3D
DMDM Disease mutations113457
Blocks (Seattle)TUBA3D
SuperfamilyQ13748
Human Protein AtlasENSG00000075886
Peptide AtlasQ13748
HPRD17085
IPIIPI00179709   IPI00218345   IPI00879535   IPI00784332   
Protein Interaction databases
DIP (DOE-UCLA)Q13748
IntAct (EBI)Q13748
FunCoupENSG00000075886
BioGRIDTUBA3D
STRING (EMBL)TUBA3D
ZODIACTUBA3D
Ontologies - Pathways
QuickGOQ13748
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBA3D
Atlas of Cancer Signalling NetworkTUBA3D
Wikipedia pathwaysTUBA3D
Orthology - Evolution
OrthoDB113457
GeneTree (enSembl)ENSG00000075886
Phylogenetic Trees/Animal Genes : TreeFamTUBA3D
HOVERGENQ13748
HOGENOMQ13748
Homologs : HomoloGeneTUBA3D
Homology/Alignments : Family Browser (UCSC)TUBA3D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA3D
dbVarTUBA3D
ClinVarTUBA3D
1000_GenomesTUBA3D 
Exome Variant ServerTUBA3D
ExAC (Exome Aggregation Consortium)TUBA3D (select the gene name)
Genetic variants : HAPMAP113457
Genomic Variants (DGV)TUBA3D [DGVbeta]
DECIPHERTUBA3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA3D 
Mutations
ICGC Data PortalTUBA3D 
TCGA Data PortalTUBA3D 
Broad Tumor PortalTUBA3D
OASIS PortalTUBA3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA3D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBA3D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBA3D
DgiDB (Drug Gene Interaction Database)TUBA3D
DoCM (Curated mutations)TUBA3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBA3D (select a term)
intoGenTUBA3D
Cancer3DTUBA3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTUBA3D
Genetic Testing Registry TUBA3D
NextProtQ13748 [Medical]
TSGene113457
GENETestsTUBA3D
Target ValidationTUBA3D
Huge Navigator TUBA3D [HugePedia]
snp3D : Map Gene to Disease113457
BioCentury BCIQTUBA3D
ClinGenTUBA3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113457
Chemical/Pharm GKB GenePA162407361
Clinical trialTUBA3D
Miscellaneous
canSAR (ICR)TUBA3D (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBA3D
EVEXTUBA3D
GoPubMedTUBA3D
iHOPTUBA3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:00 CEST 2017

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