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TUBA3E (tubulin alpha 3e)

Identity

Alias (NCBI)-
HGNC (Hugo) TUBA3E
LocusID (NCBI) 112714
Atlas_Id 75360
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130191745 and ends at 130198439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBA3E   20765
Cards
Entrez_Gene (NCBI)TUBA3E    tubulin alpha 3e
Aliases
GeneCards (Weizmann)TUBA3E
Ensembl hg19 (Hinxton)ENSG00000152086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152086 [Gene_View]  ENSG00000152086 [Sequence]  chr2:130191745-130198439 [Contig_View]  TUBA3E [Vega]
ICGC DataPortalENSG00000152086
TCGA cBioPortalTUBA3E
AceView (NCBI)TUBA3E
Genatlas (Paris)TUBA3E
SOURCE (Princeton)TUBA3E
Genetics Home Reference (NIH)TUBA3E
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA3E  -     chr2:130191745-130198439 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA3E  -     2q21.1   [Description]    (hg19-Feb_2009)
GoldenPathTUBA3E - 2q21.1 [CytoView hg19]  TUBA3E - 2q21.1 [CytoView hg38]
ImmunoBaseENSG00000152086
Genome Data Viewer NCBITUBA3E [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA397983 AK131043 BC057811
RefSeq transcript (Entrez)NM_207312
Consensus coding sequences : CCDS (NCBI)TUBA3E
Gene ExpressionTUBA3E [ NCBI-GEO ]   TUBA3E [ EBI - ARRAY_EXPRESS ]   TUBA3E [ SEEK ]   TUBA3E [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA3E [ Firebrowse - Broad ]
GenevisibleExpression of TUBA3E in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112714
GTEX Portal (Tissue expression)TUBA3E
Human Protein AtlasENSG00000152086-TUBA3E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEY2
PhosPhoSitePlusQ6PEY2
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin/FtsZ_C_sf    Tubulin/FtsZ_GTPase_sf    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBA3E
SuperfamilyQ6PEY2
AlphaFold pdb e-kbQ6PEY2   
Human Protein Atlas [tissue]ENSG00000152086-TUBA3E [tissue]
HPRD17288
Protein Interaction databases
DIP (DOE-UCLA)Q6PEY2
IntAct (EBI)Q6PEY2
BioGRIDTUBA3E
STRING (EMBL)TUBA3E
ZODIACTUBA3E
Ontologies - Pathways
QuickGOQ6PEY2
Ontology : AmiGOmicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  biological_process  microtubule cytoskeleton  
Ontology : EGO-EBImicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  biological_process  microtubule cytoskeleton  
NDEx NetworkTUBA3E
Atlas of Cancer Signalling NetworkTUBA3E
Wikipedia pathwaysTUBA3E
Orthology - Evolution
OrthoDB112714
GeneTree (enSembl)ENSG00000152086
Phylogenetic Trees/Animal Genes : TreeFamTUBA3E
Homologs : HomoloGeneTUBA3E
Homology/Alignments : Family Browser (UCSC)TUBA3E
Gene fusions - Rearrangements
Fusion : QuiverTUBA3E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA3E
dbVarTUBA3E
ClinVarTUBA3E
MonarchTUBA3E
1000_GenomesTUBA3E 
Exome Variant ServerTUBA3E
GNOMAD BrowserENSG00000152086
Varsome BrowserTUBA3E
ACMGTUBA3E variants
VarityQ6PEY2
Genomic Variants (DGV)TUBA3E [DGVbeta]
DECIPHERTUBA3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA3E 
Mutations
ICGC Data PortalTUBA3E 
TCGA Data PortalTUBA3E 
Broad Tumor PortalTUBA3E
OASIS PortalTUBA3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA3E  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBA3E
Mutations and Diseases : HGMDTUBA3E
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBA3E
DgiDB (Drug Gene Interaction Database)TUBA3E
DoCM (Curated mutations)TUBA3E
CIViC (Clinical Interpretations of Variants in Cancer)TUBA3E
Cancer3DTUBA3E
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTUBA3E
MedgenTUBA3E
Genetic Testing Registry TUBA3E
NextProtQ6PEY2 [Medical]
GENETestsTUBA3E
Target ValidationTUBA3E
Huge Navigator TUBA3E [HugePedia]
ClinGenTUBA3E
Clinical trials, drugs, therapy
MyCancerGenomeTUBA3E
Protein Interactions : CTDTUBA3E
Pharm GKB GenePA162407376
PharosQ6PEY2
Clinical trialTUBA3E
Miscellaneous
canSAR (ICR)TUBA3E
HarmonizomeTUBA3E
DataMed IndexTUBA3E
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBA3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:32 CEST 2021

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