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TUBA3E (tubulin alpha 3e)

Identity

Other alias-
HGNC (Hugo) TUBA3E
LocusID (NCBI) 112714
Atlas_Id 75360
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130191745 and ends at 130198461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBA3E   20765
Cards
Entrez_Gene (NCBI)TUBA3E  112714  tubulin alpha 3e
Aliases
GeneCards (Weizmann)TUBA3E
Ensembl hg19 (Hinxton)ENSG00000152086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152086 [Gene_View]  chr2:130191745-130198461 [Contig_View]  TUBA3E [Vega]
ICGC DataPortalENSG00000152086
TCGA cBioPortalTUBA3E
AceView (NCBI)TUBA3E
Genatlas (Paris)TUBA3E
WikiGenes112714
SOURCE (Princeton)TUBA3E
Genetics Home Reference (NIH)TUBA3E
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA3E  -     chr2:130191745-130198461 -  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA3E  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblTUBA3E - 2q21.1 [CytoView hg19]  TUBA3E - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBITUBA3E [Mapview hg19]  TUBA3E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA397983 AK131043 BC057811 HQ448482
RefSeq transcript (Entrez)NM_207312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBA3E
Cluster EST : UnigeneHs.433336 [ NCBI ]
CGAP (NCI)Hs.433336
Alternative Splicing GalleryENSG00000152086
Gene ExpressionTUBA3E [ NCBI-GEO ]   TUBA3E [ EBI - ARRAY_EXPRESS ]   TUBA3E [ SEEK ]   TUBA3E [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA3E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112714
GTEX Portal (Tissue expression)TUBA3E
Human Protein AtlasENSG00000152086-TUBA3E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PEY2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PEY2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PEY2
Splice isoforms : SwissVarQ6PEY2
PhosPhoSitePlusQ6PEY2
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBA3E
DMDM Disease mutations112714
Blocks (Seattle)TUBA3E
SuperfamilyQ6PEY2
Human Protein Atlas [tissue]ENSG00000152086-TUBA3E [tissue]
Peptide AtlasQ6PEY2
HPRD17288
IPIIPI00410402   
Protein Interaction databases
DIP (DOE-UCLA)Q6PEY2
IntAct (EBI)Q6PEY2
FunCoupENSG00000152086
BioGRIDTUBA3E
STRING (EMBL)TUBA3E
ZODIACTUBA3E
Ontologies - Pathways
QuickGOQ6PEY2
Ontology : AmiGOmolecular_function  GTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  biological_process  microtubule cytoskeleton  
Ontology : EGO-EBImolecular_function  GTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  biological_process  microtubule cytoskeleton  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBA3E
Atlas of Cancer Signalling NetworkTUBA3E
Wikipedia pathwaysTUBA3E
Orthology - Evolution
OrthoDB112714
GeneTree (enSembl)ENSG00000152086
Phylogenetic Trees/Animal Genes : TreeFamTUBA3E
HOVERGENQ6PEY2
HOGENOMQ6PEY2
Homologs : HomoloGeneTUBA3E
Homology/Alignments : Family Browser (UCSC)TUBA3E
Gene fusions - Rearrangements
Tumor Fusion PortalTUBA3E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA3E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA3E
dbVarTUBA3E
ClinVarTUBA3E
1000_GenomesTUBA3E 
Exome Variant ServerTUBA3E
ExAC (Exome Aggregation Consortium)ENSG00000152086
GNOMAD BrowserENSG00000152086
Genetic variants : HAPMAP112714
Genomic Variants (DGV)TUBA3E [DGVbeta]
DECIPHERTUBA3E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA3E 
Mutations
ICGC Data PortalTUBA3E 
TCGA Data PortalTUBA3E 
Broad Tumor PortalTUBA3E
OASIS PortalTUBA3E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA3E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBA3E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBA3E
DgiDB (Drug Gene Interaction Database)TUBA3E
DoCM (Curated mutations)TUBA3E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBA3E (select a term)
intoGenTUBA3E
Cancer3DTUBA3E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTUBA3E
MedgenTUBA3E
Genetic Testing Registry TUBA3E
NextProtQ6PEY2 [Medical]
TSGene112714
GENETestsTUBA3E
Target ValidationTUBA3E
Huge Navigator TUBA3E [HugePedia]
snp3D : Map Gene to Disease112714
BioCentury BCIQTUBA3E
ClinGenTUBA3E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112714
Chemical/Pharm GKB GenePA162407376
Clinical trialTUBA3E
Miscellaneous
canSAR (ICR)TUBA3E (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBA3E
EVEXTUBA3E
GoPubMedTUBA3E
iHOPTUBA3E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:46 CET 2017

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