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TUBA4B (tubulin alpha 4b)

Identity

Alias (NCBI)TUBA4
HGNC (Hugo) TUBA4B
HGNC Alias symbFLJ13940
HGNC Previous nameTUBA4
HGNC Previous nametubulin, alpha 4
 tubulin, alpha 4b (pseudogene)
LocusID (NCBI) 80086
Atlas_Id 57657
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219253243 and ends at 219272197 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBA4B   18637
Cards
Entrez_Gene (NCBI)TUBA4B    tubulin alpha 4b
AliasesTUBA4
GeneCards (Weizmann)TUBA4B
Ensembl hg19 (Hinxton)ENSG00000243910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243910 [Gene_View]  ENSG00000243910 [Sequence]  chr2:219253243-219272197 [Contig_View]  TUBA4B [Vega]
ICGC DataPortalENSG00000243910
TCGA cBioPortalTUBA4B
AceView (NCBI)TUBA4B
Genatlas (Paris)TUBA4B
SOURCE (Princeton)TUBA4B
Genetics Home Reference (NIH)TUBA4B
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA4B  -     chr2:219253243-219272197 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA4B  -     2q35   [Description]    (hg19-Feb_2009)
GoldenPathTUBA4B - 2q35 [CytoView hg19]  TUBA4B - 2q35 [CytoView hg38]
ImmunoBaseENSG00000243910
Genome Data Viewer NCBITUBA4B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK024002 BC121126 BC121127
RefSeq transcript (Entrez)NM_001355221
Consensus coding sequences : CCDS (NCBI)TUBA4B
Gene ExpressionTUBA4B [ NCBI-GEO ]   TUBA4B [ EBI - ARRAY_EXPRESS ]   TUBA4B [ SEEK ]   TUBA4B [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA4B [ Firebrowse - Broad ]
GenevisibleExpression of TUBA4B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80086
GTEX Portal (Tissue expression)TUBA4B
Human Protein AtlasENSG00000243910-TUBA4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H853   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H853  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H853
PhosPhoSitePlusQ9H853
Domains : Interpro (EBI)Alpha_tubulin    Tubulin    Tubulin/FtsZ_GTPase_sf    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)   
Domain families : Pfam (NCBI)pfam00091   
Domain families : Smart (EMBL)Tubulin (SM00864)  
Conserved Domain (NCBI)TUBA4B
SuperfamilyQ9H853
AlphaFold pdb e-kbQ9H853   
Human Protein Atlas [tissue]ENSG00000243910-TUBA4B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9H853
IntAct (EBI)Q9H853
BioGRIDTUBA4B
STRING (EMBL)TUBA4B
ZODIACTUBA4B
Ontologies - Pathways
QuickGOQ9H853
Ontology : AmiGOmicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  GTP binding  cellular_component  cytoplasm  microtubule  biological_process  
Ontology : EGO-EBImicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  GTP binding  cellular_component  cytoplasm  microtubule  biological_process  
NDEx NetworkTUBA4B
Atlas of Cancer Signalling NetworkTUBA4B
Wikipedia pathwaysTUBA4B
Orthology - Evolution
OrthoDB80086
GeneTree (enSembl)ENSG00000243910
Phylogenetic Trees/Animal Genes : TreeFamTUBA4B
Homologs : HomoloGeneTUBA4B
Homology/Alignments : Family Browser (UCSC)TUBA4B
Gene fusions - Rearrangements
Fusion : QuiverTUBA4B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA4B
dbVarTUBA4B
ClinVarTUBA4B
MonarchTUBA4B
1000_GenomesTUBA4B 
Exome Variant ServerTUBA4B
GNOMAD BrowserENSG00000243910
Varsome BrowserTUBA4B
ACMGTUBA4B variants
VarityQ9H853
Genomic Variants (DGV)TUBA4B [DGVbeta]
DECIPHERTUBA4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA4B 
Mutations
ICGC Data PortalTUBA4B 
TCGA Data PortalTUBA4B 
Broad Tumor PortalTUBA4B
OASIS PortalTUBA4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA4B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBA4B
Mutations and Diseases : HGMDTUBA4B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBA4B
DgiDB (Drug Gene Interaction Database)TUBA4B
DoCM (Curated mutations)TUBA4B
CIViC (Clinical Interpretations of Variants in Cancer)TUBA4B
Cancer3DTUBA4B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTUBA4B
MedgenTUBA4B
Genetic Testing Registry TUBA4B
NextProtQ9H853 [Medical]
GENETestsTUBA4B
Target ValidationTUBA4B
Huge Navigator TUBA4B [HugePedia]
ClinGenTUBA4B
Clinical trials, drugs, therapy
MyCancerGenomeTUBA4B
Protein Interactions : CTDTUBA4B
Pharm GKB GenePA38613
PharosQ9H853
Clinical trialTUBA4B
Miscellaneous
canSAR (ICR)TUBA4B
HarmonizomeTUBA4B
DataMed IndexTUBA4B
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBA4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:49 CEST 2021

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