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TUBA4B (tubulin alpha 4b)

Identity

Alias_namesTUBA4
tubulin, alpha 4
tubulin, alpha 4b (pseudogene)
Alias_symbol (synonym)FLJ13940
Other alias
HGNC (Hugo) TUBA4B
LocusID (NCBI) 80086
Atlas_Id 75362
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219253243 and ends at 219272188 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBA4B   18637
Cards
Entrez_Gene (NCBI)TUBA4B  80086  tubulin alpha 4b
AliasesTUBA4
GeneCards (Weizmann)TUBA4B
Ensembl hg19 (Hinxton)ENSG00000243910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243910 [Gene_View]  chr2:219253243-219272188 [Contig_View]  TUBA4B [Vega]
ICGC DataPortalENSG00000243910
TCGA cBioPortalTUBA4B
AceView (NCBI)TUBA4B
Genatlas (Paris)TUBA4B
WikiGenes80086
SOURCE (Princeton)TUBA4B
Genetics Home Reference (NIH)TUBA4B
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA4B  -     chr2:219253243-219272188 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA4B  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblTUBA4B - 2q35 [CytoView hg19]  TUBA4B - 2q35 [CytoView hg38]
Mapping of homologs : NCBITUBA4B [Mapview hg19]  TUBA4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024002 BC121126 BC121127
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBA4B
Cluster EST : UnigeneHs.664469 [ NCBI ]
CGAP (NCI)Hs.664469
Alternative Splicing GalleryENSG00000243910
Gene ExpressionTUBA4B [ NCBI-GEO ]   TUBA4B [ EBI - ARRAY_EXPRESS ]   TUBA4B [ SEEK ]   TUBA4B [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80086
GTEX Portal (Tissue expression)TUBA4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H853   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H853  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H853
Splice isoforms : SwissVarQ9H853
PhosPhoSitePlusQ9H853
Domains : Interpro (EBI)Alpha_tubulin    Tubulin    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)   
Domain families : Pfam (NCBI)pfam00091   
Domain families : Smart (EMBL)Tubulin (SM00864)  
Conserved Domain (NCBI)TUBA4B
DMDM Disease mutations80086
Blocks (Seattle)TUBA4B
SuperfamilyQ9H853
Human Protein AtlasENSG00000243910
Peptide AtlasQ9H853
HPRD18242
IPIIPI00017454   
Protein Interaction databases
DIP (DOE-UCLA)Q9H853
IntAct (EBI)Q9H853
FunCoupENSG00000243910
BioGRIDTUBA4B
STRING (EMBL)TUBA4B
ZODIACTUBA4B
Ontologies - Pathways
QuickGOQ9H853
Ontology : AmiGOmolecular_function  GTPase activity  structural constituent of cytoskeleton  GTP binding  cellular_component  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  biological_process  
Ontology : EGO-EBImolecular_function  GTPase activity  structural constituent of cytoskeleton  GTP binding  cellular_component  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  biological_process  
NDEx NetworkTUBA4B
Atlas of Cancer Signalling NetworkTUBA4B
Wikipedia pathwaysTUBA4B
Orthology - Evolution
OrthoDB80086
GeneTree (enSembl)ENSG00000243910
Phylogenetic Trees/Animal Genes : TreeFamTUBA4B
HOVERGENQ9H853
HOGENOMQ9H853
Homologs : HomoloGeneTUBA4B
Homology/Alignments : Family Browser (UCSC)TUBA4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA4B
dbVarTUBA4B
ClinVarTUBA4B
1000_GenomesTUBA4B 
Exome Variant ServerTUBA4B
ExAC (Exome Aggregation Consortium)TUBA4B (select the gene name)
Genetic variants : HAPMAP80086
Genomic Variants (DGV)TUBA4B [DGVbeta]
DECIPHERTUBA4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA4B 
Mutations
ICGC Data PortalTUBA4B 
TCGA Data PortalTUBA4B 
Broad Tumor PortalTUBA4B
OASIS PortalTUBA4B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTUBA4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBA4B
DgiDB (Drug Gene Interaction Database)TUBA4B
DoCM (Curated mutations)TUBA4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBA4B (select a term)
intoGenTUBA4B
Cancer3DTUBA4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTUBA4B
Genetic Testing Registry TUBA4B
NextProtQ9H853 [Medical]
TSGene80086
GENETestsTUBA4B
Target ValidationTUBA4B
Huge Navigator TUBA4B [HugePedia]
snp3D : Map Gene to Disease80086
BioCentury BCIQTUBA4B
ClinGenTUBA4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80086
Chemical/Pharm GKB GenePA38613
Clinical trialTUBA4B
Miscellaneous
canSAR (ICR)TUBA4B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBA4B
EVEXTUBA4B
GoPubMedTUBA4B
iHOPTUBA4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:48 CEST 2017

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