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TUBA8 (tubulin alpha 8)

Identity

Alias_namesTUBAL2
Other alias
HGNC (Hugo) TUBA8
LocusID (NCBI) 51807
Atlas_Id 56396
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18110687 and ends at 18131731 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBA8   12410
Cards
Entrez_Gene (NCBI)TUBA8  51807  tubulin alpha 8
AliasesTUBAL2
GeneCards (Weizmann)TUBA8
Ensembl hg19 (Hinxton)ENSG00000183785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183785 [Gene_View]  chr22:18110687-18131731 [Contig_View]  TUBA8 [Vega]
ICGC DataPortalENSG00000183785
TCGA cBioPortalTUBA8
AceView (NCBI)TUBA8
Genatlas (Paris)TUBA8
WikiGenes51807
SOURCE (Princeton)TUBA8
Genetics Home Reference (NIH)TUBA8
Genomic and cartography
GoldenPath hg38 (UCSC)TUBA8  -     chr22:18110687-18131731 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBA8  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblTUBA8 - 22q11.21 [CytoView hg19]  TUBA8 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBITUBA8 [Mapview hg19]  TUBA8 [Mapview hg38]
OMIM605742   613180   
Gene and transcription
Genbank (Entrez)AJ245922 AK056947 AK315316 BC074827 BC104845
RefSeq transcript (Entrez)NM_001193414 NM_018943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBA8
Cluster EST : UnigeneHs.137400 [ NCBI ]
CGAP (NCI)Hs.137400
Alternative Splicing GalleryENSG00000183785
Gene ExpressionTUBA8 [ NCBI-GEO ]   TUBA8 [ EBI - ARRAY_EXPRESS ]   TUBA8 [ SEEK ]   TUBA8 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51807
GTEX Portal (Tissue expression)TUBA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY65
Splice isoforms : SwissVarQ9NY65
PhosPhoSitePlusQ9NY65
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBA8
DMDM Disease mutations51807
Blocks (Seattle)TUBA8
SuperfamilyQ9NY65
Human Protein AtlasENSG00000183785
Peptide AtlasQ9NY65
HPRD05763
IPIIPI00646909   IPI00792478   IPI00791613   IPI00853556   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY65
IntAct (EBI)Q9NY65
FunCoupENSG00000183785
BioGRIDTUBA8
STRING (EMBL)TUBA8
ZODIACTUBA8
Ontologies - Pathways
QuickGOQ9NY65
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  microtubule cytoskeleton  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBA8
Atlas of Cancer Signalling NetworkTUBA8
Wikipedia pathwaysTUBA8
Orthology - Evolution
OrthoDB51807
GeneTree (enSembl)ENSG00000183785
Phylogenetic Trees/Animal Genes : TreeFamTUBA8
HOVERGENQ9NY65
HOGENOMQ9NY65
Homologs : HomoloGeneTUBA8
Homology/Alignments : Family Browser (UCSC)TUBA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBA8
dbVarTUBA8
ClinVarTUBA8
1000_GenomesTUBA8 
Exome Variant ServerTUBA8
ExAC (Exome Aggregation Consortium)TUBA8 (select the gene name)
Genetic variants : HAPMAP51807
Genomic Variants (DGV)TUBA8 [DGVbeta]
DECIPHERTUBA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBA8 
Mutations
ICGC Data PortalTUBA8 
TCGA Data PortalTUBA8 
Broad Tumor PortalTUBA8
OASIS PortalTUBA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBA8
DgiDB (Drug Gene Interaction Database)TUBA8
DoCM (Curated mutations)TUBA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBA8 (select a term)
intoGenTUBA8
Cancer3DTUBA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605742    613180   
Orphanet19595   
MedgenTUBA8
Genetic Testing Registry TUBA8
NextProtQ9NY65 [Medical]
TSGene51807
GENETestsTUBA8
Target ValidationTUBA8
Huge Navigator TUBA8 [HugePedia]
snp3D : Map Gene to Disease51807
BioCentury BCIQTUBA8
ClinGenTUBA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51807
Chemical/Pharm GKB GenePA37074
Clinical trialTUBA8
Miscellaneous
canSAR (ICR)TUBA8 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBA8
EVEXTUBA8
GoPubMedTUBA8
iHOPTUBA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:59 CEST 2017

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