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TUBAL3 (tubulin alpha like 3)

Identity

Alias_namestubulin, alpha-like 3
Alias_symbol (synonym)FLJ21665
Other alias-
HGNC (Hugo) TUBAL3
LocusID (NCBI) 79861
Atlas_Id 75364
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5393098 and ends at 5404830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
WDR37 (10p15.3) / TUBAL3 (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBAL3   23534
Cards
Entrez_Gene (NCBI)TUBAL3  79861  tubulin alpha like 3
Aliases
GeneCards (Weizmann)TUBAL3
Ensembl hg19 (Hinxton)ENSG00000178462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178462 [Gene_View]  chr10:5393098-5404830 [Contig_View]  TUBAL3 [Vega]
ICGC DataPortalENSG00000178462
TCGA cBioPortalTUBAL3
AceView (NCBI)TUBAL3
Genatlas (Paris)TUBAL3
WikiGenes79861
SOURCE (Princeton)TUBAL3
Genetics Home Reference (NIH)TUBAL3
Genomic and cartography
GoldenPath hg38 (UCSC)TUBAL3  -     chr10:5393098-5404830 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBAL3  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblTUBAL3 - 10p15.1 [CytoView hg19]  TUBAL3 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBITUBAL3 [Mapview hg19]  TUBAL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025318 AK296616 BC098247 BC099716 BC105634
RefSeq transcript (Entrez)NM_001171864 NM_024803
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBAL3
Cluster EST : UnigeneHs.163079 [ NCBI ]
CGAP (NCI)Hs.163079
Alternative Splicing GalleryENSG00000178462
Gene ExpressionTUBAL3 [ NCBI-GEO ]   TUBAL3 [ EBI - ARRAY_EXPRESS ]   TUBAL3 [ SEEK ]   TUBAL3 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBAL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79861
GTEX Portal (Tissue expression)TUBAL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHL2
Splice isoforms : SwissVarA6NHL2
PhosPhoSitePlusA6NHL2
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Alpha_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBAL3
DMDM Disease mutations79861
Blocks (Seattle)TUBAL3
SuperfamilyA6NHL2
Human Protein AtlasENSG00000178462
Peptide AtlasA6NHL2
HPRD08640
IPIIPI00015671   IPI00879904   
Protein Interaction databases
DIP (DOE-UCLA)A6NHL2
IntAct (EBI)A6NHL2
FunCoupENSG00000178462
BioGRIDTUBAL3
STRING (EMBL)TUBAL3
ZODIACTUBAL3
Ontologies - Pathways
QuickGOA6NHL2
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  cytoskeleton organization  microtubule-based process  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBAL3
Atlas of Cancer Signalling NetworkTUBAL3
Wikipedia pathwaysTUBAL3
Orthology - Evolution
OrthoDB79861
GeneTree (enSembl)ENSG00000178462
Phylogenetic Trees/Animal Genes : TreeFamTUBAL3
HOVERGENA6NHL2
HOGENOMA6NHL2
Homologs : HomoloGeneTUBAL3
Homology/Alignments : Family Browser (UCSC)TUBAL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBAL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBAL3
dbVarTUBAL3
ClinVarTUBAL3
1000_GenomesTUBAL3 
Exome Variant ServerTUBAL3
ExAC (Exome Aggregation Consortium)TUBAL3 (select the gene name)
Genetic variants : HAPMAP79861
Genomic Variants (DGV)TUBAL3 [DGVbeta]
DECIPHERTUBAL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBAL3 
Mutations
ICGC Data PortalTUBAL3 
TCGA Data PortalTUBAL3 
Broad Tumor PortalTUBAL3
OASIS PortalTUBAL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBAL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBAL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBAL3
DgiDB (Drug Gene Interaction Database)TUBAL3
DoCM (Curated mutations)TUBAL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBAL3 (select a term)
intoGenTUBAL3
Cancer3DTUBAL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTUBAL3
Genetic Testing Registry TUBAL3
NextProtA6NHL2 [Medical]
TSGene79861
GENETestsTUBAL3
Target ValidationTUBAL3
Huge Navigator TUBAL3 [HugePedia]
snp3D : Map Gene to Disease79861
BioCentury BCIQTUBAL3
ClinGenTUBAL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79861
Chemical/Pharm GKB GenePA134953102
Clinical trialTUBAL3
Miscellaneous
canSAR (ICR)TUBAL3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBAL3
EVEXTUBAL3
GoPubMedTUBAL3
iHOPTUBAL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:01 CEST 2017

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