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TUBB1 (tubulin beta 1 class VI)

Identity

Alias_namestubulin
Alias_symbol (synonym)dJ543J19.4
Other alias-
HGNC (Hugo) TUBB1
LocusID (NCBI) 81027
Atlas_Id 43959
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 59019254 and ends at 59026654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RABGAP1L (1q25.1) / TUBB1 (20q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBB1   16257
LRG (Locus Reference Genomic)LRG_581
Cards
Entrez_Gene (NCBI)TUBB1  81027  tubulin beta 1 class VI
Aliases
GeneCards (Weizmann)TUBB1
Ensembl hg19 (Hinxton)ENSG00000101162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101162 [Gene_View]  chr20:59019254-59026654 [Contig_View]  TUBB1 [Vega]
ICGC DataPortalENSG00000101162
TCGA cBioPortalTUBB1
AceView (NCBI)TUBB1
Genatlas (Paris)TUBB1
WikiGenes81027
SOURCE (Princeton)TUBB1
Genetics Home Reference (NIH)TUBB1
Genomic and cartography
GoldenPath hg38 (UCSC)TUBB1  -     chr20:59019254-59026654 +  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBB1  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblTUBB1 - 20q13.32 [CytoView hg19]  TUBB1 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBITUBB1 [Mapview hg19]  TUBB1 [Mapview hg38]
OMIM612901   613112   
Gene and transcription
Genbank (Entrez)AJ292757 BC033679 BI821931 JF432703
RefSeq transcript (Entrez)NM_030773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBB1
Cluster EST : UnigeneHs.303023 [ NCBI ]
CGAP (NCI)Hs.303023
Alternative Splicing GalleryENSG00000101162
Gene ExpressionTUBB1 [ NCBI-GEO ]   TUBB1 [ EBI - ARRAY_EXPRESS ]   TUBB1 [ SEEK ]   TUBB1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81027
GTEX Portal (Tissue expression)TUBB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4B7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4B7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4B7
Splice isoforms : SwissVarQ9H4B7
PhosPhoSitePlusQ9H4B7
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)    TUBULIN_B_AUTOREG (PS00228)   
Domains : Interpro (EBI)Beta-tubulin_BS    Beta_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBB1
DMDM Disease mutations81027
Blocks (Seattle)TUBB1
SuperfamilyQ9H4B7
Human Protein AtlasENSG00000101162
Peptide AtlasQ9H4B7
HPRD18243
IPIIPI00006510   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4B7
IntAct (EBI)Q9H4B7
FunCoupENSG00000101162
BioGRIDTUBB1
STRING (EMBL)TUBB1
ZODIACTUBB1
Ontologies - Pathways
QuickGOQ9H4B7
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  microtubule cytoskeleton  spindle assembly  extracellular exosome  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  microtubule cytoskeleton  spindle assembly  extracellular exosome  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBB1
Atlas of Cancer Signalling NetworkTUBB1
Wikipedia pathwaysTUBB1
Orthology - Evolution
OrthoDB81027
GeneTree (enSembl)ENSG00000101162
Phylogenetic Trees/Animal Genes : TreeFamTUBB1
HOVERGENQ9H4B7
HOGENOMQ9H4B7
Homologs : HomoloGeneTUBB1
Homology/Alignments : Family Browser (UCSC)TUBB1
Gene fusions - Rearrangements
Fusion : MitelmanRABGAP1L/TUBB1 [1q25.1/20q13.32]  [t(1;20)(q25;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBB1
dbVarTUBB1
ClinVarTUBB1
1000_GenomesTUBB1 
Exome Variant ServerTUBB1
ExAC (Exome Aggregation Consortium)TUBB1 (select the gene name)
Genetic variants : HAPMAP81027
Genomic Variants (DGV)TUBB1 [DGVbeta]
DECIPHERTUBB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBB1 
Mutations
ICGC Data PortalTUBB1 
TCGA Data PortalTUBB1 
Broad Tumor PortalTUBB1
OASIS PortalTUBB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBB1
DgiDB (Drug Gene Interaction Database)TUBB1
DoCM (Curated mutations)TUBB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBB1 (select a term)
intoGenTUBB1
Cancer3DTUBB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612901    613112   
Orphanet17007   
MedgenTUBB1
Genetic Testing Registry TUBB1
NextProtQ9H4B7 [Medical]
TSGene81027
GENETestsTUBB1
Huge Navigator TUBB1 [HugePedia]
snp3D : Map Gene to Disease81027
BioCentury BCIQTUBB1
ClinGenTUBB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81027
Chemical/Pharm GKB GenePA38100
Clinical trialTUBB1
Miscellaneous
canSAR (ICR)TUBB1 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBB1
EVEXTUBB1
GoPubMedTUBB1
iHOPTUBB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:43 CEST 2017

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