Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TUBB4A (tubulin beta 4A class IVa)

Identity

Alias_namesTUBB4
DYT4
tubulin, beta 4
tubulin, beta 4 class IVa
dystonia 4, torsion (autosomal dominant)
Alias_symbol (synonym)beta-5
Other alias
HGNC (Hugo) TUBB4A
LocusID (NCBI) 10382
Atlas_Id 56600
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6494319 and ends at 6502584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KDM5A (12p13.33) / TUBB4A (19p13.3)LDB3 (10q23.2) / TUBB4A (19p13.3)MALAT1 (11q13.1) / TUBB4A (19p13.3)
PBX2 (6p21.32) / TUBB4A (19p13.3)PPT2 (6p21.32) / TUBB4A (19p13.3)RILPL1 (12q24.31) / TUBB4A (19p13.3)
TUBB4A (19p13.3) / RBM20 (10q25.2)TUBB4A (19p13.3) / TCF4 (18q21.2)TUBG2 (17q21.2) / TUBB4A (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBB4A   20774
Cards
Entrez_Gene (NCBI)TUBB4A  10382  tubulin beta 4A class IVa
AliasesDYT4; TUBB4; beta-5
GeneCards (Weizmann)TUBB4A
Ensembl hg19 (Hinxton)ENSG00000104833 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104833 [Gene_View]  ENSG00000104833 [Sequence]  chr19:6494319-6502584 [Contig_View]  TUBB4A [Vega]
ICGC DataPortalENSG00000104833
TCGA cBioPortalTUBB4A
AceView (NCBI)TUBB4A
Genatlas (Paris)TUBB4A
WikiGenes10382
SOURCE (Princeton)TUBB4A
Genetics Home Reference (NIH)TUBB4A
Genomic and cartography
GoldenPath hg38 (UCSC)TUBB4A  -     chr19:6494319-6502584 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBB4A  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTUBB4A - 19p13.3 [CytoView hg19]  TUBB4A - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000104833
Mapping of homologs : NCBITUBB4A [Mapview hg19]  TUBB4A [Mapview hg38]
OMIM128101   602662   612438   
Gene and transcription
Genbank (Entrez)AK075307 AK095202 AK293503 AK294102 AK295917
RefSeq transcript (Entrez)NM_001289123 NM_001289127 NM_001289129 NM_001289130 NM_001289131 NM_006087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBB4A
Alternative Splicing GalleryENSG00000104833
Gene ExpressionTUBB4A [ NCBI-GEO ]   TUBB4A [ EBI - ARRAY_EXPRESS ]   TUBB4A [ SEEK ]   TUBB4A [ MEM ]
Gene Expression Viewer (FireBrowse)TUBB4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10382
GTEX Portal (Tissue expression)TUBB4A
Human Protein AtlasENSG00000104833-TUBB4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUBB4A
DMDM Disease mutations10382
Blocks (Seattle)TUBB4A
Human Protein Atlas [tissue]ENSG00000104833-TUBB4A [tissue]
HPRD04045
IPIIPI00023598   IPI00956241   IPI00926685   
Protein Interaction databases
FunCoupENSG00000104833
BioGRIDTUBB4A
STRING (EMBL)TUBB4A
ZODIACTUBB4A
Ontologies - Pathways
Huge Navigator TUBB4A [HugePedia]
snp3D : Map Gene to Disease10382
BioCentury BCIQTUBB4A
ClinGenTUBB4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10382
Chemical/Pharm GKB GenePA134949465
Clinical trialTUBB4A
Miscellaneous
canSAR (ICR)TUBB4A (select the gene name)
DataMed IndexTUBB4A
Probes
Litterature
PubMed136 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBB4A
EVEXTUBB4A
GoPubMedTUBB4A
iHOPTUBB4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:53 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.