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TUBB6 (tubulin beta 6 class V)

Identity

Alias (NCBI)FPVEPD
HsT1601
TUBB-5
HGNC (Hugo) TUBB6
HGNC Alias symbMGC4083
HsT1601
HGNC Alias nametubulin beta MGC4083
 class V beta-tubulin
HGNC Previous nametubulin, beta 6
 tubulin, beta 6 class V
LocusID (NCBI) 84617
Atlas_Id 51758
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12308241 and ends at 12326616 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADI1 (2p25.3) / TUBB6 (18p11.21)IL4I1 (19q13.33) / TUBB6 (18p11.21)RYR2 (1q43) / TUBB6 (18p11.21)
TUBB6 (18p11.21) / ROBO1 (3p12.3)TUBB6 18p11.21 / ROBO1 3p12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBB6   20776
Cards
Entrez_Gene (NCBI)TUBB6    tubulin beta 6 class V
AliasesFPVEPD; HsT1601; TUBB-5
GeneCards (Weizmann)TUBB6
Ensembl hg19 (Hinxton)ENSG00000176014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176014 [Gene_View]  ENSG00000176014 [Sequence]  chr18:12308241-12326616 [Contig_View]  TUBB6 [Vega]
ICGC DataPortalENSG00000176014
TCGA cBioPortalTUBB6
AceView (NCBI)TUBB6
Genatlas (Paris)TUBB6
SOURCE (Princeton)TUBB6
Genetics Home Reference (NIH)TUBB6
Genomic and cartography
GoldenPath hg38 (UCSC)TUBB6  -     chr18:12308241-12326616 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBB6  -     18p11.21   [Description]    (hg19-Feb_2009)
GoldenPathTUBB6 - 18p11.21 [CytoView hg19]  TUBB6 - 18p11.21 [CytoView hg38]
ImmunoBaseENSG00000176014
Genome Data Viewer NCBITUBB6 [Mapview hg19]  
OMIM615103   617732   
Gene and transcription
Genbank (Entrez)AK001295 AK022340 AK092677 AK098440 AK298196
RefSeq transcript (Entrez)NM_001303524 NM_001303525 NM_001303526 NM_001303527 NM_001303528 NM_001303529 NM_001303530 NM_032525
Consensus coding sequences : CCDS (NCBI)TUBB6
Gene ExpressionTUBB6 [ NCBI-GEO ]   TUBB6 [ EBI - ARRAY_EXPRESS ]   TUBB6 [ SEEK ]   TUBB6 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBB6 [ Firebrowse - Broad ]
GenevisibleExpression of TUBB6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84617
GTEX Portal (Tissue expression)TUBB6
Human Protein AtlasENSG00000176014-TUBB6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUF5
PhosPhoSitePlusQ9BUF5
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)    TUBULIN_B_AUTOREG (PS00228)   
Domains : Interpro (EBI)Beta-tubulin_BS    Beta_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin/FtsZ_C_sf    Tubulin/FtsZ_GTPase_sf    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBB6
SuperfamilyQ9BUF5
AlphaFold pdb e-kbQ9BUF5   
Human Protein Atlas [tissue]ENSG00000176014-TUBB6 [tissue]
HPRD11349
Protein Interaction databases
DIP (DOE-UCLA)Q9BUF5
IntAct (EBI)Q9BUF5
BioGRIDTUBB6
STRING (EMBL)TUBB6
ZODIACTUBB6
Ontologies - Pathways
QuickGOQ9BUF5
Ontology : AmiGOmicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  microtubule  extracellular exosome  
Ontology : EGO-EBImicrotubule cytoskeleton organization  mitotic cell cycle  molecular_function  structural constituent of cytoskeleton  protein binding  GTP binding  nucleus  cytoplasm  microtubule  microtubule  extracellular exosome  
Pathways : KEGGPhagosome    Gap junction    Pathogenic Escherichia coli infection   
NDEx NetworkTUBB6
Atlas of Cancer Signalling NetworkTUBB6
Wikipedia pathwaysTUBB6
Orthology - Evolution
OrthoDB84617
GeneTree (enSembl)ENSG00000176014
Phylogenetic Trees/Animal Genes : TreeFamTUBB6
Homologs : HomoloGeneTUBB6
Homology/Alignments : Family Browser (UCSC)TUBB6
Gene fusions - Rearrangements
Fusion : MitelmanTUBB6/ROBO1 [18p11.21/3p12.3]  
Fusion : QuiverTUBB6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBB6
dbVarTUBB6
ClinVarTUBB6
MonarchTUBB6
1000_GenomesTUBB6 
Exome Variant ServerTUBB6
GNOMAD BrowserENSG00000176014
Varsome BrowserTUBB6
ACMGTUBB6 variants
VarityQ9BUF5
Genomic Variants (DGV)TUBB6 [DGVbeta]
DECIPHERTUBB6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBB6 
Mutations
ICGC Data PortalTUBB6 
TCGA Data PortalTUBB6 
Broad Tumor PortalTUBB6
OASIS PortalTUBB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBB6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBB6
Mutations and Diseases : HGMDTUBB6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBB6
DgiDB (Drug Gene Interaction Database)TUBB6
DoCM (Curated mutations)TUBB6
CIViC (Clinical Interpretations of Variants in Cancer)TUBB6
Cancer3DTUBB6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615103    617732   
Orphanet
DisGeNETTUBB6
MedgenTUBB6
Genetic Testing Registry TUBB6
NextProtQ9BUF5 [Medical]
GENETestsTUBB6
Target ValidationTUBB6
Huge Navigator TUBB6 [HugePedia]
ClinGenTUBB6
Clinical trials, drugs, therapy
MyCancerGenomeTUBB6
Protein Interactions : CTDTUBB6
Pharm GKB GenePA128394736
PharosQ9BUF5
Clinical trialTUBB6
Miscellaneous
canSAR (ICR)TUBB6
HarmonizomeTUBB6
DataMed IndexTUBB6
Probes
Litterature
PubMed120 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:50 CEST 2021

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