Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TUBBP5 (tubulin beta pseudogene 5)

Identity

Alias_namestubulin, beta polypeptide pseudogene 5
tubulin, beta pseudogene 5
Other alias-
HGNC (Hugo) TUBBP5
LocusID (NCBI) 643224
Atlas_Id 75369
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 138150113 and ends at 138177433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBBP5   23674
Cards
Entrez_Gene (NCBI)TUBBP5  643224  tubulin beta pseudogene 5
Aliases
GeneCards (Weizmann)TUBBP5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:138150113-138177433 [Contig_View]  TUBBP5 [Vega]
TCGA cBioPortalTUBBP5
AceView (NCBI)TUBBP5
Genatlas (Paris)TUBBP5
WikiGenes643224
SOURCE (Princeton)TUBBP5
Genetics Home Reference (NIH)TUBBP5
Genomic and cartography
GoldenPath hg38 (UCSC)TUBBP5  -     chr9:138150113-138177433 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBBP5  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblTUBBP5 - 9q34.3 [CytoView hg19]  TUBBP5 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBITUBBP5 [Mapview hg19]  TUBBP5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308459
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBBP5
Cluster EST : UnigeneHs.551805 [ NCBI ]
CGAP (NCI)Hs.551805
Gene ExpressionTUBBP5 [ NCBI-GEO ]   TUBBP5 [ EBI - ARRAY_EXPRESS ]   TUBBP5 [ SEEK ]   TUBBP5 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBBP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643224
GTEX Portal (Tissue expression)TUBBP5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TUBBP5
DMDM Disease mutations643224
Blocks (Seattle)TUBBP5
IPIIPI00739915   
Protein Interaction databases
BioGRIDTUBBP5
STRING (EMBL)TUBBP5
ZODIACTUBBP5
Ontologies - Pathways
Huge Navigator TUBBP5 [HugePedia]
snp3D : Map Gene to Disease643224
BioCentury BCIQTUBBP5
ClinGenTUBBP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643224
Chemical/Pharm GKB GenePA134867163
Clinical trialTUBBP5
Miscellaneous
canSAR (ICR)TUBBP5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBBP5
EVEXTUBBP5
GoPubMedTUBBP5
iHOPTUBBP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:56 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.