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TUBD1 (tubulin delta 1)

Identity

Alias_namestubulin, delta 1
Alias_symbol (synonym)FLJ12709
TUBD
Other alias
HGNC (Hugo) TUBD1
LocusID (NCBI) 51174
Atlas_Id 75370
Location 17q23.1  [Link to chromosome band 17q23]
Location_base_pair Starts at 59859480 and ends at 59892945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DLGAP4 (20q11.23) / TUBD1 (17q23.1)RPS6KB1 (17q23.1) / TUBD1 (17q23.1)TRIM37 (17q22) / TUBD1 (17q23.1)
TUBD1 (17q23.1) / CDK12 (17q12)TUBD1 (17q23.1) / HEATR6 (17q23.1)TUBD1 (17q23.1) / INPP5D (2q37.1)
TUBD1 (17q23.1) / RPS6KB1 (17q23.1)TUBD1 (17q23.1) / SEC31B (10q24.31)TUBD1 (17q23.1) / TOM1L1 (17q22)
TUBD1 (17q23.1) / USP32 (17q23.1)TUBD1 (17q23.1) / VMP1 (17q23.1)TUBD1 CDK12
TUBD1 HEATR6TUBD1 INPP5DTUBD1 VMP1
TUBD1 USP32TUBD1 TOM1L1TUBD1 RPS6KB1
DLGAP4 TUBD1TRIM37 TUBD1RPS6KB1 TUBD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBD1   16811
Cards
Entrez_Gene (NCBI)TUBD1  51174  tubulin delta 1
AliasesTUBD
GeneCards (Weizmann)TUBD1
Ensembl hg19 (Hinxton)ENSG00000108423 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108423 [Gene_View]  chr17:59859480-59892945 [Contig_View]  TUBD1 [Vega]
ICGC DataPortalENSG00000108423
TCGA cBioPortalTUBD1
AceView (NCBI)TUBD1
Genatlas (Paris)TUBD1
WikiGenes51174
SOURCE (Princeton)TUBD1
Genetics Home Reference (NIH)TUBD1
Genomic and cartography
GoldenPath hg38 (UCSC)TUBD1  -     chr17:59859480-59892945 -  17q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBD1  -     17q23.1   [Description]    (hg19-Feb_2009)
EnsemblTUBD1 - 17q23.1 [CytoView hg19]  TUBD1 - 17q23.1 [CytoView hg38]
Mapping of homologs : NCBITUBD1 [Mapview hg19]  TUBD1 [Mapview hg38]
OMIM607344   
Gene and transcription
Genbank (Entrez)AB030837 AB031044 AB031045 AF201333 AK022771
RefSeq transcript (Entrez)NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBD1
Cluster EST : UnigeneHs.463638 [ NCBI ]
CGAP (NCI)Hs.463638
Alternative Splicing GalleryENSG00000108423
Gene ExpressionTUBD1 [ NCBI-GEO ]   TUBD1 [ EBI - ARRAY_EXPRESS ]   TUBD1 [ SEEK ]   TUBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51174
GTEX Portal (Tissue expression)TUBD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJT1
Splice isoforms : SwissVarQ9UJT1
PhosPhoSitePlusQ9UJT1
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Delta_tubulin    Tub_FtsZ_C    Tubulin    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)   
Domain families : Pfam (NCBI)pfam00091   
Domain families : Smart (EMBL)Tubulin (SM00864)  
Conserved Domain (NCBI)TUBD1
DMDM Disease mutations51174
Blocks (Seattle)TUBD1
SuperfamilyQ9UJT1
Human Protein AtlasENSG00000108423
Peptide AtlasQ9UJT1
HPRD06297
IPIIPI00007120   IPI00332938   IPI00217181   IPI00911061   IPI00552138   IPI00979185   IPI00979886   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJT1
IntAct (EBI)Q9UJT1
FunCoupENSG00000108423
BioGRIDTUBD1
STRING (EMBL)TUBD1
ZODIACTUBD1
Ontologies - Pathways
QuickGOQ9UJT1
Ontology : AmiGOGTPase activity  structural constituent of cytoskeleton  GTP binding  nucleoplasm  centriole  cytosol  microtubule  cytoskeleton organization  microtubule-based process  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIGTPase activity  structural constituent of cytoskeleton  GTP binding  nucleoplasm  centriole  cytosol  microtubule  cytoskeleton organization  microtubule-based process  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkTUBD1
Atlas of Cancer Signalling NetworkTUBD1
Wikipedia pathwaysTUBD1
Orthology - Evolution
OrthoDB51174
GeneTree (enSembl)ENSG00000108423
Phylogenetic Trees/Animal Genes : TreeFamTUBD1
HOVERGENQ9UJT1
HOGENOMQ9UJT1
Homologs : HomoloGeneTUBD1
Homology/Alignments : Family Browser (UCSC)TUBD1
Gene fusions - Rearrangements
Fusion: TCGATUBD1 CDK12
Fusion: TCGATUBD1 HEATR6
Fusion: TCGATUBD1 INPP5D
Fusion: TCGATUBD1 VMP1
Fusion: TCGATUBD1 USP32
Fusion: TCGATUBD1 TOM1L1
Fusion: TCGATUBD1 RPS6KB1
Fusion: TCGADLGAP4 TUBD1
Fusion: TCGATRIM37 TUBD1
Fusion: TCGARPS6KB1 TUBD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBD1
dbVarTUBD1
ClinVarTUBD1
1000_GenomesTUBD1 
Exome Variant ServerTUBD1
ExAC (Exome Aggregation Consortium)TUBD1 (select the gene name)
Genetic variants : HAPMAP51174
Genomic Variants (DGV)TUBD1 [DGVbeta]
DECIPHERTUBD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBD1 
Mutations
ICGC Data PortalTUBD1 
TCGA Data PortalTUBD1 
Broad Tumor PortalTUBD1
OASIS PortalTUBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBD1
DgiDB (Drug Gene Interaction Database)TUBD1
DoCM (Curated mutations)TUBD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBD1 (select a term)
intoGenTUBD1
Cancer3DTUBD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607344   
Orphanet
MedgenTUBD1
Genetic Testing Registry TUBD1
NextProtQ9UJT1 [Medical]
TSGene51174
GENETestsTUBD1
Target ValidationTUBD1
Huge Navigator TUBD1 [HugePedia]
snp3D : Map Gene to Disease51174
BioCentury BCIQTUBD1
ClinGenTUBD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51174
Chemical/Pharm GKB GenePA134909953
Clinical trialTUBD1
Miscellaneous
canSAR (ICR)TUBD1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBD1
EVEXTUBD1
GoPubMedTUBD1
iHOPTUBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:01 CEST 2017

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