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TUBD1 (tubulin delta 1)

Identity

Alias (NCBI)TUBD
HGNC (Hugo) TUBD1
HGNC Alias symbFLJ12709
TUBD
HGNC Previous nametubulin, delta 1
LocusID (NCBI) 51174
Atlas_Id 75370
Location 17q23.1  [Link to chromosome band 17q23]
Location_base_pair Starts at 59859480 and ends at 59892943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DLGAP4 (20q11.23) / TUBD1 (17q23.1)RPS6KB1 (17q23.1) / TUBD1 (17q23.1)TRIM37 (17q22) / TUBD1 (17q23.1)
TUBD1 (17q23.1) / CDK12 (17q12)TUBD1 (17q23.1) / HEATR6 (17q23.1)TUBD1 (17q23.1) / INPP5D (2q37.1)
TUBD1 (17q23.1) / RPS6KB1 (17q23.1)TUBD1 (17q23.1) / SEC31B (10q24.31)TUBD1 (17q23.1) / TOM1L1 (17q22)
TUBD1 (17q23.1) / USP32 (17q23.1)TUBD1 (17q23.1) / VMP1 (17q23.1)TUBD1 CDK12
TUBD1 HEATR6TUBD1 INPP5DTUBD1 VMP1
TUBD1 USP32TUBD1 TOM1L1TUBD1 RPS6KB1
DLGAP4 TUBD1TRIM37 TUBD1RPS6KB1 TUBD1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBD1   16811
Cards
Entrez_Gene (NCBI)TUBD1    tubulin delta 1
AliasesTUBD
GeneCards (Weizmann)TUBD1
Ensembl hg19 (Hinxton)ENSG00000108423 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108423 [Gene_View]  ENSG00000108423 [Sequence]  chr17:59859480-59892943 [Contig_View]  TUBD1 [Vega]
ICGC DataPortalENSG00000108423
TCGA cBioPortalTUBD1
AceView (NCBI)TUBD1
Genatlas (Paris)TUBD1
SOURCE (Princeton)TUBD1
Genetics Home Reference (NIH)TUBD1
Genomic and cartography
GoldenPath hg38 (UCSC)TUBD1  -     chr17:59859480-59892943 -  17q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBD1  -     17q23.1   [Description]    (hg19-Feb_2009)
GoldenPathTUBD1 - 17q23.1 [CytoView hg19]  TUBD1 - 17q23.1 [CytoView hg38]
ImmunoBaseENSG00000108423
Genome Data Viewer NCBITUBD1 [Mapview hg19]  
OMIM607344   
Gene and transcription
Genbank (Entrez)AB030837 AB031044 AB031045 AF201333 AK022771
RefSeq transcript (Entrez)NM_001193609 NM_001193610 NM_001193611 NM_001193612 NM_001193613 NM_016261
Consensus coding sequences : CCDS (NCBI)TUBD1
Gene ExpressionTUBD1 [ NCBI-GEO ]   TUBD1 [ EBI - ARRAY_EXPRESS ]   TUBD1 [ SEEK ]   TUBD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBD1 [ Firebrowse - Broad ]
GenevisibleExpression of TUBD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51174
GTEX Portal (Tissue expression)TUBD1
Human Protein AtlasENSG00000108423-TUBD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJT1
PhosPhoSitePlusQ9UJT1
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Delta_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_GTPase_sf    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)   
Domain families : Pfam (NCBI)pfam00091   
Domain families : Smart (EMBL)Tubulin (SM00864)  
Conserved Domain (NCBI)TUBD1
SuperfamilyQ9UJT1
AlphaFold pdb e-kbQ9UJT1   
Human Protein Atlas [tissue]ENSG00000108423-TUBD1 [tissue]
HPRD06297
Protein Interaction databases
DIP (DOE-UCLA)Q9UJT1
IntAct (EBI)Q9UJT1
BioGRIDTUBD1
STRING (EMBL)TUBD1
ZODIACTUBD1
Ontologies - Pathways
QuickGOQ9UJT1
Ontology : AmiGOmicrotubule cytoskeleton organization  mitotic cell cycle  structural constituent of cytoskeleton  GTP binding  nucleoplasm  cytoplasm  centriole  cytosol  microtubule  cilium  multicellular organism development  cell projection organization  positive regulation of smoothened signaling pathway  
Ontology : EGO-EBImicrotubule cytoskeleton organization  mitotic cell cycle  structural constituent of cytoskeleton  GTP binding  nucleoplasm  cytoplasm  centriole  cytosol  microtubule  cilium  multicellular organism development  cell projection organization  positive regulation of smoothened signaling pathway  
NDEx NetworkTUBD1
Atlas of Cancer Signalling NetworkTUBD1
Wikipedia pathwaysTUBD1
Orthology - Evolution
OrthoDB51174
GeneTree (enSembl)ENSG00000108423
Phylogenetic Trees/Animal Genes : TreeFamTUBD1
Homologs : HomoloGeneTUBD1
Homology/Alignments : Family Browser (UCSC)TUBD1
Gene fusions - Rearrangements
Fusion : QuiverTUBD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBD1
dbVarTUBD1
ClinVarTUBD1
MonarchTUBD1
1000_GenomesTUBD1 
Exome Variant ServerTUBD1
GNOMAD BrowserENSG00000108423
Varsome BrowserTUBD1
ACMGTUBD1 variants
VarityQ9UJT1
Genomic Variants (DGV)TUBD1 [DGVbeta]
DECIPHERTUBD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBD1 
Mutations
ICGC Data PortalTUBD1 
TCGA Data PortalTUBD1 
Broad Tumor PortalTUBD1
OASIS PortalTUBD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBD1
Mutations and Diseases : HGMDTUBD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBD1
DgiDB (Drug Gene Interaction Database)TUBD1
DoCM (Curated mutations)TUBD1
CIViC (Clinical Interpretations of Variants in Cancer)TUBD1
Cancer3DTUBD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607344   
Orphanet
DisGeNETTUBD1
MedgenTUBD1
Genetic Testing Registry TUBD1
NextProtQ9UJT1 [Medical]
GENETestsTUBD1
Target ValidationTUBD1
Huge Navigator TUBD1 [HugePedia]
ClinGenTUBD1
Clinical trials, drugs, therapy
MyCancerGenomeTUBD1
Protein Interactions : CTDTUBD1
Pharm GKB GenePA134909953
PharosQ9UJT1
Clinical trialTUBD1
Miscellaneous
canSAR (ICR)TUBD1
HarmonizomeTUBD1
DataMed IndexTUBD1
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:34 CEST 2021

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