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TUBE1 (tubulin epsilon 1)

Identity

Alias_namestubulin, epsilon 1
Alias_symbol (synonym)dJ142L7.2
FLJ22589
TUBE
Other alias
HGNC (Hugo) TUBE1
LocusID (NCBI) 51175
Atlas_Id 75371
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 112070657 and ends at 112087548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBE1   20775
Cards
Entrez_Gene (NCBI)TUBE1  51175  tubulin epsilon 1
AliasesTUBE; dJ142L7.2
GeneCards (Weizmann)TUBE1
Ensembl hg19 (Hinxton)ENSG00000074935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074935 [Gene_View]  ENSG00000074935 [Sequence]  chr6:112070657-112087548 [Contig_View]  TUBE1 [Vega]
ICGC DataPortalENSG00000074935
TCGA cBioPortalTUBE1
AceView (NCBI)TUBE1
Genatlas (Paris)TUBE1
WikiGenes51175
SOURCE (Princeton)TUBE1
Genetics Home Reference (NIH)TUBE1
Genomic and cartography
GoldenPath hg38 (UCSC)TUBE1  -     chr6:112070657-112087548 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBE1  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblTUBE1 - 6q21 [CytoView hg19]  TUBE1 - 6q21 [CytoView hg38]
Mapping of homologs : NCBITUBE1 [Mapview hg19]  TUBE1 [Mapview hg38]
OMIM607345   
Gene and transcription
Genbank (Entrez)AF201334 AK026242 AK126191 BC025405 BC031101
RefSeq transcript (Entrez)NM_016262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUBE1
Cluster EST : UnigeneHs.34851 [ NCBI ]
CGAP (NCI)Hs.34851
Alternative Splicing GalleryENSG00000074935
Gene ExpressionTUBE1 [ NCBI-GEO ]   TUBE1 [ EBI - ARRAY_EXPRESS ]   TUBE1 [ SEEK ]   TUBE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51175
GTEX Portal (Tissue expression)TUBE1
Human Protein AtlasENSG00000074935-TUBE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJT0
Splice isoforms : SwissVarQ9UJT0
PhosPhoSitePlusQ9UJT0
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Epsilon_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBE1
DMDM Disease mutations51175
Blocks (Seattle)TUBE1
SuperfamilyQ9UJT0
Human Protein Atlas [tissue]ENSG00000074935-TUBE1 [tissue]
Peptide AtlasQ9UJT0
HPRD06298
IPIIPI00007119   IPI00553047   IPI00645108   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJT0
IntAct (EBI)Q9UJT0
FunCoupENSG00000074935
BioGRIDTUBE1
STRING (EMBL)TUBE1
ZODIACTUBE1
Ontologies - Pathways
QuickGOQ9UJT0
Ontology : AmiGOpericentriolar material  GTPase activity  structural constituent of cytoskeleton  GTP binding  microtubule  centrosome cycle  
Ontology : EGO-EBIpericentriolar material  GTPase activity  structural constituent of cytoskeleton  GTP binding  microtubule  centrosome cycle  
NDEx NetworkTUBE1
Atlas of Cancer Signalling NetworkTUBE1
Wikipedia pathwaysTUBE1
Orthology - Evolution
OrthoDB51175
GeneTree (enSembl)ENSG00000074935
Phylogenetic Trees/Animal Genes : TreeFamTUBE1
HOVERGENQ9UJT0
HOGENOMQ9UJT0
Homologs : HomoloGeneTUBE1
Homology/Alignments : Family Browser (UCSC)TUBE1
Gene fusions - Rearrangements
Fusion : QuiverTUBE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBE1
dbVarTUBE1
ClinVarTUBE1
1000_GenomesTUBE1 
Exome Variant ServerTUBE1
ExAC (Exome Aggregation Consortium)ENSG00000074935
GNOMAD BrowserENSG00000074935
Varsome BrowserTUBE1
Genetic variants : HAPMAP51175
Genomic Variants (DGV)TUBE1 [DGVbeta]
DECIPHERTUBE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBE1 
Mutations
ICGC Data PortalTUBE1 
TCGA Data PortalTUBE1 
Broad Tumor PortalTUBE1
OASIS PortalTUBE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBE1
DgiDB (Drug Gene Interaction Database)TUBE1
DoCM (Curated mutations)TUBE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBE1 (select a term)
intoGenTUBE1
Cancer3DTUBE1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607345   
Orphanet
DisGeNETTUBE1
MedgenTUBE1
Genetic Testing Registry TUBE1
NextProtQ9UJT0 [Medical]
TSGene51175
GENETestsTUBE1
Target ValidationTUBE1
Huge Navigator TUBE1 [HugePedia]
snp3D : Map Gene to Disease51175
BioCentury BCIQTUBE1
ClinGenTUBE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51175
Chemical/Pharm GKB GenePA134936770
Clinical trialTUBE1
Miscellaneous
canSAR (ICR)TUBE1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBE1
EVEXTUBE1
GoPubMedTUBE1
iHOPTUBE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:37:22 CEST 2018

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