Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TUBE1 (tubulin epsilon 1)

Identity

Alias (NCBI)TUBE
dJ142L7.2
HGNC (Hugo) TUBE1
HGNC Alias symbdJ142L7.2
FLJ22589
TUBE
HGNC Previous nametubulin, epsilon 1
LocusID (NCBI) 51175
Atlas_Id 75371
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 112070663 and ends at 112087482 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TUBE1   20775
Cards
Entrez_Gene (NCBI)TUBE1    tubulin epsilon 1
AliasesTUBE; dJ142L7.2
GeneCards (Weizmann)TUBE1
Ensembl hg19 (Hinxton)ENSG00000074935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074935 [Gene_View]  ENSG00000074935 [Sequence]  chr6:112070663-112087482 [Contig_View]  TUBE1 [Vega]
ICGC DataPortalENSG00000074935
TCGA cBioPortalTUBE1
AceView (NCBI)TUBE1
Genatlas (Paris)TUBE1
SOURCE (Princeton)TUBE1
Genetics Home Reference (NIH)TUBE1
Genomic and cartography
GoldenPath hg38 (UCSC)TUBE1  -     chr6:112070663-112087482 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUBE1  -     6q21   [Description]    (hg19-Feb_2009)
GoldenPathTUBE1 - 6q21 [CytoView hg19]  TUBE1 - 6q21 [CytoView hg38]
ImmunoBaseENSG00000074935
Genome Data Viewer NCBITUBE1 [Mapview hg19]  
OMIM607345   
Gene and transcription
Genbank (Entrez)AF201334 AK026242 AK126191 BC025405 BC031101
RefSeq transcript (Entrez)NM_016262
Consensus coding sequences : CCDS (NCBI)TUBE1
Gene ExpressionTUBE1 [ NCBI-GEO ]   TUBE1 [ EBI - ARRAY_EXPRESS ]   TUBE1 [ SEEK ]   TUBE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBE1 [ Firebrowse - Broad ]
GenevisibleExpression of TUBE1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51175
GTEX Portal (Tissue expression)TUBE1
Human Protein AtlasENSG00000074935-TUBE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJT0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJT0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJT0
PhosPhoSitePlusQ9UJT0
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Epsilon_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin/FtsZ_GTPase_sf    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBE1
SuperfamilyQ9UJT0
AlphaFold pdb e-kbQ9UJT0   
Human Protein Atlas [tissue]ENSG00000074935-TUBE1 [tissue]
HPRD06298
Protein Interaction databases
DIP (DOE-UCLA)Q9UJT0
IntAct (EBI)Q9UJT0
BioGRIDTUBE1
STRING (EMBL)TUBE1
ZODIACTUBE1
Ontologies - Pathways
QuickGOQ9UJT0
Ontology : AmiGOmicrotubule cytoskeleton organization  pericentriolar material  mitotic cell cycle  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  centrosome cycle  
Ontology : EGO-EBImicrotubule cytoskeleton organization  pericentriolar material  mitotic cell cycle  structural constituent of cytoskeleton  GTP binding  cytoplasm  microtubule  centrosome cycle  
NDEx NetworkTUBE1
Atlas of Cancer Signalling NetworkTUBE1
Wikipedia pathwaysTUBE1
Orthology - Evolution
OrthoDB51175
GeneTree (enSembl)ENSG00000074935
Phylogenetic Trees/Animal Genes : TreeFamTUBE1
Homologs : HomoloGeneTUBE1
Homology/Alignments : Family Browser (UCSC)TUBE1
Gene fusions - Rearrangements
Fusion : QuiverTUBE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBE1
dbVarTUBE1
ClinVarTUBE1
MonarchTUBE1
1000_GenomesTUBE1 
Exome Variant ServerTUBE1
GNOMAD BrowserENSG00000074935
Varsome BrowserTUBE1
ACMGTUBE1 variants
VarityQ9UJT0
Genomic Variants (DGV)TUBE1 [DGVbeta]
DECIPHERTUBE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUBE1 
Mutations
ICGC Data PortalTUBE1 
TCGA Data PortalTUBE1 
Broad Tumor PortalTUBE1
OASIS PortalTUBE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBE1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUBE1
Mutations and Diseases : HGMDTUBE1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTUBE1
DgiDB (Drug Gene Interaction Database)TUBE1
DoCM (Curated mutations)TUBE1
CIViC (Clinical Interpretations of Variants in Cancer)TUBE1
Cancer3DTUBE1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607345   
Orphanet
DisGeNETTUBE1
MedgenTUBE1
Genetic Testing Registry TUBE1
NextProtQ9UJT0 [Medical]
GENETestsTUBE1
Target ValidationTUBE1
Huge Navigator TUBE1 [HugePedia]
ClinGenTUBE1
Clinical trials, drugs, therapy
MyCancerGenomeTUBE1
Protein Interactions : CTDTUBE1
Pharm GKB GenePA134936770
PharosQ9UJT0
Clinical trialTUBE1
Miscellaneous
canSAR (ICR)TUBE1
HarmonizomeTUBE1
DataMed IndexTUBE1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTUBE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:34 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.