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TUBG1 (tubulin gamma 1)

Identity

Alias_namesTUBG
tubulin, gamma polypeptide
tubulin, gamma 1
Alias_symbol (synonym)TUBGCP1
Other aliasCDCBM4
GCP-1
HGNC (Hugo) TUBG1
LocusID (NCBI) 7283
Atlas_Id 50980
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40761358 and ends at 40767256 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TUBG1 (17q21.2) / TUBG1 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TUBG1   12417
Cards
Entrez_Gene (NCBI)TUBG1  7283  tubulin gamma 1
AliasesCDCBM4; GCP-1; TUBG; TUBGCP1
GeneCards (Weizmann)TUBG1
Ensembl hg19 (Hinxton)ENSG00000131462 [Gene_View]  chr17:40761358-40767256 [Contig_View]  TUBG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131462 [Gene_View]  chr17:40761358-40767256 [Contig_View]  TUBG1 [Vega]
ICGC DataPortalENSG00000131462
TCGA cBioPortalTUBG1
AceView (NCBI)TUBG1
Genatlas (Paris)TUBG1
WikiGenes7283
SOURCE (Princeton)TUBG1
Genetics Home Reference (NIH)TUBG1
Genomic and cartography
GoldenPath hg19 (UCSC)TUBG1  -     chr17:40761358-40767256 +  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TUBG1  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblTUBG1 - 17q21.2 [CytoView hg19]  TUBG1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBITUBG1 [Mapview hg19]  TUBG1 [Mapview hg38]
OMIM191135   615412   
Gene and transcription
Genbank (Entrez)AK311637 AK313339 BC000619 BG167819 BT019931
RefSeq transcript (Entrez)NM_001070
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_033886 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)TUBG1
Cluster EST : UnigeneHs.279669 [ NCBI ]
CGAP (NCI)Hs.279669
Alternative Splicing GalleryENSG00000131462
Gene ExpressionTUBG1 [ NCBI-GEO ]   TUBG1 [ EBI - ARRAY_EXPRESS ]   TUBG1 [ SEEK ]   TUBG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TUBG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7283
GTEX Portal (Tissue expression)TUBG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23258   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23258  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23258
Splice isoforms : SwissVarP23258
PhosPhoSitePlusP23258
Domaine pattern : Prosite (Expaxy)TUBULIN (PS00227)   
Domains : Interpro (EBI)Gamma_tubulin    Tub_FtsZ_C    Tubulin    Tubulin/FtsZ_2-layer-sand-dom    Tubulin_C    Tubulin_CS    Tubulin_FtsZ_GTPase   
Domain families : Pfam (Sanger)Tubulin (PF00091)    Tubulin_C (PF03953)   
Domain families : Pfam (NCBI)pfam00091    pfam03953   
Domain families : Smart (EMBL)Tubulin (SM00864)  Tubulin_C (SM00865)  
Conserved Domain (NCBI)TUBG1
DMDM Disease mutations7283
Blocks (Seattle)TUBG1
PDB (SRS)1Z5V    1Z5W    3CB2   
PDB (PDBSum)1Z5V    1Z5W    3CB2   
PDB (IMB)1Z5V    1Z5W    3CB2   
PDB (RSDB)1Z5V    1Z5W    3CB2   
Structural Biology KnowledgeBase1Z5V    1Z5W    3CB2   
SCOP (Structural Classification of Proteins)1Z5V    1Z5W    3CB2   
CATH (Classification of proteins structures)1Z5V    1Z5W    3CB2   
SuperfamilyP23258
Human Protein AtlasENSG00000131462
Peptide AtlasP23258
HPRD01853
IPIIPI00295081   
Protein Interaction databases
DIP (DOE-UCLA)P23258
IntAct (EBI)P23258
FunCoupENSG00000131462
BioGRIDTUBG1
STRING (EMBL)TUBG1
ZODIACTUBG1
Ontologies - Pathways
QuickGOP23258
Ontology : AmiGOG2/M transition of mitotic cell cycle  meiotic spindle organization  microtubule cytoskeleton organization  pericentriolar material  condensed nuclear chromosome  gamma-tubulin complex  GTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  cytoplasm  cytoplasm  centrosome  centriole  polar microtubule  cytosol  cytoplasmic microtubule  microtubule nucleation  metabolic process  cytoplasmic microtubule organization  cell leading edge  nonmotile primary cilium  ciliary basal body  apical part of cell  recycling endosome  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  meiotic spindle organization  microtubule cytoskeleton organization  pericentriolar material  condensed nuclear chromosome  gamma-tubulin complex  GTPase activity  structural constituent of cytoskeleton  protein binding  GTP binding  cytoplasm  cytoplasm  centrosome  centriole  polar microtubule  cytosol  cytoplasmic microtubule  microtubule nucleation  metabolic process  cytoplasmic microtubule organization  cell leading edge  nonmotile primary cilium  ciliary basal body  apical part of cell  recycling endosome  
NDEx NetworkTUBG1
Atlas of Cancer Signalling NetworkTUBG1
Wikipedia pathwaysTUBG1
Orthology - Evolution
OrthoDB7283
GeneTree (enSembl)ENSG00000131462
Phylogenetic Trees/Animal Genes : TreeFamTUBG1
HOVERGENP23258
HOGENOMP23258
Homologs : HomoloGeneTUBG1
Homology/Alignments : Family Browser (UCSC)TUBG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUBG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUBG1
dbVarTUBG1
ClinVarTUBG1
1000_GenomesTUBG1 
Exome Variant ServerTUBG1
ExAC (Exome Aggregation Consortium)TUBG1 (select the gene name)
Genetic variants : HAPMAP7283
Genomic Variants (DGV)TUBG1 [DGVbeta]
DECIPHER (Syndromes)17:40761358-40767256  ENSG00000131462
CONAN: Copy Number AnalysisTUBG1 
Mutations
ICGC Data PortalTUBG1 
TCGA Data PortalTUBG1 
Broad Tumor PortalTUBG1
OASIS PortalTUBG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUBG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTUBG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUBG1
DgiDB (Drug Gene Interaction Database)TUBG1
DoCM (Curated mutations)TUBG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUBG1 (select a term)
intoGenTUBG1
Cancer3DTUBG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM191135    615412   
Orphanet
MedgenTUBG1
Genetic Testing Registry TUBG1
NextProtP23258 [Medical]
TSGene7283
GENETestsTUBG1
Huge Navigator TUBG1 [HugePedia]
snp3D : Map Gene to Disease7283
BioCentury BCIQTUBG1
ClinGenTUBG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7283
Chemical/Pharm GKB GenePA37079
Clinical trialTUBG1
Miscellaneous
canSAR (ICR)TUBG1 (select the gene name)
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUBG1
EVEXTUBG1
GoPubMedTUBG1
iHOPTUBG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:51 CEST 2017

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